noone@mail.com Analysis of Dieting study 16S data % Fri Sep 7 05:46:18 2018

(1.2.1.3.6) Plots of Abundance.

Plots are shown with relation to various combinations of meta data variables and in different graphical representations. Lots of plots here.

(1.2.1.3.6.2) Iterating over all combinations of grouping variables
(1.2.1.3.6.2.1) Grouping variables Sample.type
(1.2.1.3.6.2.2) Iterating over Abundance. profile sorting order
(1.2.1.3.6.2.2.1) Abundance. profile sorting order: average abundance
(1.2.1.3.6.2.2.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.2.1.3.6.2.2.2.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.2.1.3.6.2.2.2.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.3.6.2.2.2.1.1.0) Table 87. Data table used for plots. Data grouped by Sample.type. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.3.6.2.2.2.1.1.0-323626d932a.1.2.1.3.6.2.2.2.1.1.csv

.record.id Sample.type feature Abundance
SB1 control Bacteroides 6.247e-01
SB10 control Bacteroides 6.327e-02
SB11 patient Bacteroides 4.295e-01
SB12 control Bacteroides 0.000e+00
SB13 control Bacteroides 2.126e-01
SB14 control Bacteroides 7.465e-02
SB15 control Bacteroides 5.242e-01
SB16 patient Bacteroides 8.130e-01
SB17 patient Bacteroides 1.435e-01
SB18 patient Bacteroides 8.611e-01
SB19 control Bacteroides 1.797e-02
SB21 control Bacteroides 1.440e-01
SB22 patient Bacteroides 5.831e-01
SB23 patient Bacteroides 6.404e-01
SB24 control Bacteroides 3.247e-01
SB25 control Bacteroides 4.587e-01
SB26 control Bacteroides 3.742e-01
SB28 patient Bacteroides 1.747e-01
SB29 patient Bacteroides 8.679e-01
SB3 control Bacteroides 2.611e-02
SB30 patient Bacteroides 8.108e-01
SB31 control Bacteroides 6.218e-01
SB32 control Bacteroides 3.301e-01
SB33 control Bacteroides 8.153e-01
SB34 patient Bacteroides 7.735e-01
SB35 patient Bacteroides 9.643e-01
SB36 patient Bacteroides 5.438e-01
SB38 patient Bacteroides 4.095e-01
SB39 patient Bacteroides 5.037e-01
SB4 patient Bacteroides 9.292e-01
SB40 control Bacteroides 4.955e-01
SB41 patient Bacteroides 8.674e-01
SB42 patient Bacteroides 6.375e-01
SB43 patient Bacteroides 2.885e-01
SB44 patient Bacteroides 8.199e-01
SB45 control Bacteroides 2.115e-03
SB5 patient Bacteroides 8.105e-02
SB6 patient Bacteroides 7.723e-01
SB7 control Bacteroides 4.120e-01
SB8 patient Bacteroides 4.490e-01
SB9 patient Bacteroides 3.976e-02
SB1 control Prevotella 2.046e-03
SB10 control Prevotella 4.438e-01
SB11 patient Prevotella 1.652e-02
SB12 control Prevotella 0.000e+00
SB13 control Prevotella 0.000e+00
SB14 control Prevotella 6.747e-01
SB15 control Prevotella 2.758e-04
SB16 patient Prevotella 4.137e-04
SB17 patient Prevotella 6.822e-01
SB18 patient Prevotella 2.480e-04
SB19 control Prevotella 1.978e-01
SB21 control Prevotella 5.399e-04
SB22 patient Prevotella 0.000e+00
SB23 patient Prevotella 0.000e+00
SB24 control Prevotella 2.151e-03
SB25 control Prevotella 2.131e-03
SB26 control Prevotella 0.000e+00
SB28 patient Prevotella 0.000e+00
SB29 patient Prevotella 3.600e-04
SB3 control Prevotella 3.314e-01
SB30 patient Prevotella 1.009e-04
SB31 control Prevotella 2.198e-04
SB32 control Prevotella 7.741e-04
SB33 control Prevotella 5.743e-05
SB34 patient Prevotella 2.598e-04
SB35 patient Prevotella 0.000e+00
SB36 patient Prevotella 1.804e-01
SB38 patient Prevotella 4.073e-01
SB39 patient Prevotella 0.000e+00
SB4 patient Prevotella 0.000e+00
SB40 control Prevotella 0.000e+00
SB41 patient Prevotella 1.328e-04
SB42 patient Prevotella 0.000e+00
SB43 patient Prevotella 4.502e-01
SB44 patient Prevotella 0.000e+00
SB45 control Prevotella 8.603e-01
SB5 patient Prevotella 8.062e-03
SB6 patient Prevotella 7.416e-04
SB7 control Prevotella 1.415e-04
SB8 patient Prevotella 0.000e+00
SB9 patient Prevotella 1.855e-02
SB1 control Unclassified_Lachnospiraceae 2.637e-02
SB10 control Unclassified_Lachnospiraceae 7.553e-02
SB11 patient Unclassified_Lachnospiraceae 1.116e-02
SB12 control Unclassified_Lachnospiraceae 9.506e-02
SB13 control Unclassified_Lachnospiraceae 1.862e-01
SB14 control Unclassified_Lachnospiraceae 7.117e-02
SB15 control Unclassified_Lachnospiraceae 7.501e-02
SB16 patient Unclassified_Lachnospiraceae 2.938e-02
SB17 patient Unclassified_Lachnospiraceae 1.402e-02
SB18 patient Unclassified_Lachnospiraceae 1.097e-02
SB19 control Unclassified_Lachnospiraceae 5.214e-02
SB21 control Unclassified_Lachnospiraceae 1.109e-01
SB22 patient Unclassified_Lachnospiraceae 1.113e-01
SB23 patient Unclassified_Lachnospiraceae 6.495e-02
SB24 control Unclassified_Lachnospiraceae 3.844e-02
SB25 control Unclassified_Lachnospiraceae 2.323e-02
SB26 control Unclassified_Lachnospiraceae 2.256e-02
SB28 patient Unclassified_Lachnospiraceae 3.934e-03
SB29 patient Unclassified_Lachnospiraceae 3.240e-03
SB3 control Unclassified_Lachnospiraceae 5.534e-02
SB30 patient Unclassified_Lachnospiraceae 8.278e-03
SB31 control Unclassified_Lachnospiraceae 6.396e-02
SB32 control Unclassified_Lachnospiraceae 1.078e-01
SB33 control Unclassified_Lachnospiraceae 4.324e-02
SB34 patient Unclassified_Lachnospiraceae 4.529e-02
SB35 patient Unclassified_Lachnospiraceae 1.204e-03
SB36 patient Unclassified_Lachnospiraceae 0.000e+00
SB38 patient Unclassified_Lachnospiraceae 1.135e-02
SB39 patient Unclassified_Lachnospiraceae 2.995e-02
SB4 patient Unclassified_Lachnospiraceae 6.331e-03
SB40 control Unclassified_Lachnospiraceae 6.498e-02
SB41 patient Unclassified_Lachnospiraceae 1.049e-02
SB42 patient Unclassified_Lachnospiraceae 4.444e-02
SB43 patient Unclassified_Lachnospiraceae 1.844e-03
SB44 patient Unclassified_Lachnospiraceae 3.899e-02
SB45 control Unclassified_Lachnospiraceae 1.763e-02
SB5 patient Unclassified_Lachnospiraceae 9.925e-02
SB6 patient Unclassified_Lachnospiraceae 1.112e-02
SB7 control Unclassified_Lachnospiraceae 5.053e-02
SB8 patient Unclassified_Lachnospiraceae 5.532e-02
SB9 patient Unclassified_Lachnospiraceae 6.172e-02
SB1 control Alistipes 5.342e-02
SB10 control Alistipes 2.614e-02
SB11 patient Alistipes 2.482e-01
SB12 control Alistipes 0.000e+00
SB13 control Alistipes 0.000e+00
SB14 control Alistipes 1.418e-02
SB15 control Alistipes 0.000e+00
SB16 patient Alistipes 0.000e+00
SB17 patient Alistipes 3.344e-03
SB18 patient Alistipes 2.480e-04
SB19 control Alistipes 1.039e-02
SB21 control Alistipes 1.152e-02
SB22 patient Alistipes 8.061e-03
SB23 patient Alistipes 6.092e-02
SB24 control Alistipes 3.071e-01
SB25 control Alistipes 1.162e-01
SB26 control Alistipes 1.064e-01
SB28 patient Alistipes 0.000e+00
SB29 patient Alistipes 2.808e-02
SB3 control Alistipes 2.383e-02
SB30 patient Alistipes 4.487e-02
SB31 control Alistipes 5.861e-03
SB32 control Alistipes 3.902e-02
SB33 control Alistipes 0.000e+00
SB34 patient Alistipes 9.784e-03
SB35 patient Alistipes 0.000e+00
SB36 patient Alistipes 2.740e-02
SB38 patient Alistipes 7.861e-02
SB39 patient Alistipes 1.514e-02
SB4 patient Alistipes 0.000e+00
SB40 control Alistipes 2.642e-02
SB41 patient Alistipes 5.613e-02
SB42 patient Alistipes 0.000e+00
SB43 patient Alistipes 1.058e-02
SB44 patient Alistipes 4.393e-03
SB45 control Alistipes 8.814e-05
SB5 patient Alistipes 0.000e+00
SB6 patient Alistipes 3.522e-02
SB7 control Alistipes 6.419e-02
SB8 patient Alistipes 1.164e-01
SB9 patient Alistipes 0.000e+00
SB1 control Faecalibacterium 2.273e-02
SB10 control Faecalibacterium 5.799e-02
SB11 patient Faecalibacterium 4.018e-03
SB12 control Faecalibacterium 0.000e+00
SB13 control Faecalibacterium 2.421e-02
SB14 control Faecalibacterium 3.571e-02
SB15 control Faecalibacterium 1.193e-02
SB16 patient Faecalibacterium 4.137e-04
SB17 patient Faecalibacterium 2.804e-02
SB18 patient Faecalibacterium 1.550e-03
SB19 control Faecalibacterium 1.059e-01
SB21 control Faecalibacterium 1.195e-01
SB22 patient Faecalibacterium 1.267e-02
SB23 patient Faecalibacterium 2.891e-02
SB24 control Faecalibacterium 1.406e-02
SB25 control Faecalibacterium 2.110e-02
SB26 control Faecalibacterium 3.760e-03
SB28 patient Faecalibacterium 0.000e+00
SB29 patient Faecalibacterium 8.999e-03
SB3 control Faecalibacterium 1.018e-01
SB30 patient Faecalibacterium 1.620e-02
SB31 control Faecalibacterium 4.484e-02
SB32 control Faecalibacterium 5.589e-02
SB33 control Faecalibacterium 3.578e-02
SB34 patient Faecalibacterium 1.030e-02
SB35 patient Faecalibacterium 2.047e-02
SB36 patient Faecalibacterium 4.795e-02
SB38 patient Faecalibacterium 4.735e-03
SB39 patient Faecalibacterium 3.221e-02
SB4 patient Faecalibacterium 1.115e-02
SB40 control Faecalibacterium 2.535e-02
SB41 patient Faecalibacterium 8.897e-03
SB42 patient Faecalibacterium 5.553e-02
SB43 patient Faecalibacterium 3.553e-02
SB44 patient Faecalibacterium 2.252e-02
SB45 control Faecalibacterium 6.522e-03

(1.2.1.3.6.2.2.2.1.1.1) Widget 91. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by Sample.type. Click to see HTML widget file in full window: ./1.2.1.3.6.2.2.2.1.1.1-32322b0d3b1Dynamic.Pivot.Table.html

(1.2.1.3.6.2.2.2.1.1.1) Widget 92. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by Sample.type. Click to see HTML widget file in full window: ./1.2.1.3.6.2.2.2.1.1.1-3237b0a5160Dynamic.Pivot.Table.html

(1.2.1.3.6.2.2.2.1.1.1) Table 88. Summary table. Data grouped by Sample.type. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.3.6.2.2.2.1.1.1-3233f41cfee.1.2.1.3.6.2.2.2.1.1.csv

feature Sample.type mean sd median incidence
Bacteroides control 0.3067667 0.251936 3.274e-01 0.94444
Bacteroides patient 0.5827510 0.287387 6.375e-01 1.00000
Prevotella control 0.1397999 0.264522 6.570e-04 0.77778
Prevotella patient 0.0767600 0.182368 2.480e-04 0.60870
Unclassified_Lachnospiraceae control 0.0655540 0.041083 5.965e-02 1.00000
Unclassified_Lachnospiraceae patient 0.0293288 0.031477 1.135e-02 0.95652
Alistipes control 0.0447037 0.074383 1.901e-02 0.77778
Alistipes patient 0.0324937 0.056098 9.784e-03 0.69565
Faecalibacterium control 0.0402492 0.035750 3.053e-02 0.94444
Faecalibacterium patient 0.0272857 0.029759 2.047e-02 0.95652
Ruminococcus control 0.0570637 0.089643 2.219e-02 0.94444
Ruminococcus patient 0.0051753 0.009151 1.893e-03 0.91304
Parabacteroides control 0.0088394 0.007836 6.610e-03 0.94444
Parabacteroides patient 0.0373501 0.105187 2.651e-03 0.73913
Unclassified_Ruminococcaceae control 0.0339247 0.031348 2.150e-02 0.94444
Unclassified_Ruminococcaceae patient 0.0123984 0.025370 6.698e-03 1.00000
Lachnospiracea_incertae_sedis control 0.0335219 0.029027 2.800e-02 0.94444
Lachnospiracea_incertae_sedis patient 0.0101701 0.011313 4.911e-03 0.91304
Blautia control 0.0289371 0.045018 1.644e-02 1.00000
Blautia patient 0.0123540 0.016403 4.067e-03 0.95652
Unclassified_Clostridiales control 0.0191043 0.021458 1.279e-02 0.94444
Unclassified_Clostridiales patient 0.0111868 0.014283 7.085e-03 1.00000
Clostridium_XI control 0.0093565 0.009819 7.265e-03 0.94444
Clostridium_XI patient 0.0174076 0.045710 2.423e-03 0.82609
Escherichia_Shigella control 0.0099026 0.039532 3.853e-04 0.61111
Escherichia_Shigella patient 0.0141029 0.044061 0.000e+00 0.39130
Erysipelotrichaceae_incertae_sedis control 0.0011320 0.001596 5.687e-04 0.77778
Erysipelotrichaceae_incertae_sedis patient 0.0200729 0.079990 1.212e-03 0.73913
Unclassified_Bacteria control 0.0143963 0.011932 1.273e-02 1.00000
Unclassified_Bacteria patient 0.0085863 0.018505 3.658e-03 0.95652
Clostridium_IV control 0.0171240 0.021312 1.207e-02 0.94444
Clostridium_IV patient 0.0051572 0.008729 1.461e-03 0.82609
Sutterella control 0.0101164 0.027441 1.351e-03 0.61111
Sutterella patient 0.0065465 0.014865 4.426e-05 0.52174
Megamonas control 0.0153668 0.042782 0.000e+00 0.16667
Megamonas patient 0.0021745 0.010405 0.000e+00 0.08696
Bifidobacterium control 0.0150614 0.044413 1.889e-03 0.83333
Bifidobacterium patient 0.0017907 0.004699 3.015e-04 0.65217
Akkermansia control 0.0034469 0.006657 0.000e+00 0.38889
Akkermansia patient 0.0105567 0.036854 0.000e+00 0.34783
Clostridium_XlVa control 0.0087277 0.012406 4.857e-03 0.94444
Clostridium_XlVa patient 0.0061832 0.007227 4.820e-03 0.95652
Roseburia control 0.0093204 0.006595 6.719e-03 1.00000
Roseburia patient 0.0052684 0.006228 2.966e-03 0.86957
Dorea control 0.0085626 0.008832 5.340e-03 0.94444
Dorea patient 0.0049215 0.009620 1.112e-03 0.73913
Unclassified_Firmicutes control 0.0085028 0.010888 3.831e-03 1.00000
Unclassified_Firmicutes patient 0.0024286 0.003396 8.410e-04 0.86957
Lactobacillus control 0.0101656 0.042700 0.000e+00 0.27778
Lactobacillus patient 0.0003493 0.001159 0.000e+00 0.17391
Unclassified_Bacteroidales control 0.0022287 0.003932 1.211e-03 0.83333
Unclassified_Bacteroidales patient 0.0063594 0.013756 2.017e-03 1.00000
Clostridium_XVIII control 0.0044237 0.010249 1.121e-03 0.94444
Clostridium_XVIII patient 0.0035808 0.004204 1.786e-03 0.86957
Gemmiger control 0.0059795 0.005787 4.956e-03 0.83333
Gemmiger patient 0.0017996 0.003060 3.015e-04 0.56522
Streptococcus control 0.0055314 0.017846 4.000e-04 0.83333
Streptococcus patient 0.0021337 0.004859 1.009e-04 0.69565
Enterococcus control 0.0033431 0.013146 0.000e+00 0.22222
Enterococcus patient 0.0033912 0.014927 0.000e+00 0.34783
Clostridium_sensu_stricto control 0.0031234 0.007063 3.666e-04 0.83333
Clostridium_sensu_stricto patient 0.0033437 0.007211 6.071e-05 0.52174
Oscillibacter control 0.0044635 0.005391 3.262e-03 0.88889
Oscillibacter patient 0.0022633 0.003198 1.032e-03 0.78261
Unclassified_Enterobacteriaceae control 0.0028637 0.011365 0.000e+00 0.27778
Unclassified_Enterobacteriaceae patient 0.0032363 0.013092 0.000e+00 0.26087
Phascolarctobacterium control 0.0041073 0.009834 0.000e+00 0.22222
Phascolarctobacterium patient 0.0019338 0.004752 0.000e+00 0.39130
Odoribacter control 0.0035311 0.006451 1.477e-04 0.55556
Odoribacter patient 0.0019267 0.004960 0.000e+00 0.26087
Klebsiella control 0.0051171 0.021503 0.000e+00 0.16667
Klebsiella patient 0.0003720 0.001428 0.000e+00 0.21739
Barnesiella control 0.0026788 0.005378 2.871e-05 0.50000
Barnesiella patient 0.0011158 0.003513 0.000e+00 0.26087
Unclassified_Prevotellaceae control 0.0023462 0.006777 0.000e+00 0.33333
Unclassified_Prevotellaceae patient 0.0012765 0.005105 0.000e+00 0.21739
Catenibacterium control 0.0030692 0.011967 0.000e+00 0.11111
Catenibacterium patient 0.0002785 0.001336 0.000e+00 0.04348
Unclassified_Burkholderiales control 0.0014189 0.003669 0.000e+00 0.22222
Unclassified_Burkholderiales patient 0.0014888 0.004149 0.000e+00 0.17391

(1.2.1.3.6.2.2.2.1.1.1) Figure 303. Abundance. Data grouped by Sample.type. bar_stacked plot. Image file: plots/32338bc0578.svg.

(1.2.1.3.6.2.2.2.1.1.1) Figure 304. Abundance. Data grouped by Sample.type. bar (sample mean) plot. Image file: plots/32346eef005.svg.

(1.2.1.3.6.2.2.2.1.1.1) Figure 305. Abundance. Data grouped by Sample.type. violin plot. Image file: plots/323517f6de3.svg.

(1.2.1.3.6.2.2.2.1.1.1) Figure 306. Abundance. Data grouped by Sample.type. boxplot plot. Image file: plots/3235c6a41ee.svg.

(1.2.1.3.6.2.2.2.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.3.6.2.2.2.1.2.1) Figure 307. Abundance. Data grouped by Sample.type. bar (sample mean) plot. Image file: plots/3232ac3fdc0.svg.

(1.2.1.3.6.2.2.2.1.2.1) Figure 308. Abundance. Data grouped by Sample.type. violin plot. Image file: plots/3234de6a619.svg.

(1.2.1.3.6.2.2.2.1.2.1) Figure 309. Abundance. Data grouped by Sample.type. boxplot plot. Image file: plots/3235baf79ff.svg.

(1.2.1.3.6.2.2.2.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.2.1.3.6.2.2.2.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.3.6.2.2.2.2.1.1) Figure 310. Abundance. Data grouped by Sample.type. bar (sample mean) plot. Image file: plots/32337578b0f.svg.

(1.2.1.3.6.2.2.2.2.1.1) Figure 311. Abundance. Data grouped by Sample.type. violin plot. Image file: plots/323ac3b49b.svg.

(1.2.1.3.6.2.2.2.2.1.1) Figure 312. Abundance. Data grouped by Sample.type. boxplot plot. Image file: plots/3237ee39a75.svg.

(1.2.1.3.6.2.2.2.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.3.6.2.2.2.2.2.1) Figure 313. Abundance. Data grouped by Sample.type. bar (sample mean) plot. Image file: plots/3233c6be5f6.svg.

(1.2.1.3.6.2.2.2.2.2.1) Figure 314. Abundance. Data grouped by Sample.type. violin plot. Image file: plots/32350ecbf37.svg.

(1.2.1.3.6.2.2.2.2.2.1) Figure 315. Abundance. Data grouped by Sample.type. boxplot plot. Image file: plots/3231da1ae2e.svg.

(1.2.1.3.6.2.2.3) Abundance. profile sorting order: Ranking by 'stabsel' method
(1.2.1.3.6.2.2.4) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.2.1.3.6.2.2.4.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.2.1.3.6.2.2.4.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.3.6.2.2.4.1.1.0) Table 89. Data table used for plots. Data grouped by Sample.type. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.3.6.2.2.4.1.1.0-3234712a8a.1.2.1.3.6.2.2.4.1.1.csv

.record.id Sample.type feature Abundance
SB1 control Bacteroides 6.247e-01
SB10 control Bacteroides 6.327e-02
SB11 patient Bacteroides 4.295e-01
SB12 control Bacteroides 0.000e+00
SB13 control Bacteroides 2.126e-01
SB14 control Bacteroides 7.465e-02
SB15 control Bacteroides 5.242e-01
SB16 patient Bacteroides 8.130e-01
SB17 patient Bacteroides 1.435e-01
SB18 patient Bacteroides 8.611e-01
SB19 control Bacteroides 1.797e-02
SB21 control Bacteroides 1.440e-01
SB22 patient Bacteroides 5.831e-01
SB23 patient Bacteroides 6.404e-01
SB24 control Bacteroides 3.247e-01
SB25 control Bacteroides 4.587e-01
SB26 control Bacteroides 3.742e-01
SB28 patient Bacteroides 1.747e-01
SB29 patient Bacteroides 8.679e-01
SB3 control Bacteroides 2.611e-02
SB30 patient Bacteroides 8.108e-01
SB31 control Bacteroides 6.218e-01
SB32 control Bacteroides 3.301e-01
SB33 control Bacteroides 8.153e-01
SB34 patient Bacteroides 7.735e-01
SB35 patient Bacteroides 9.643e-01
SB36 patient Bacteroides 5.438e-01
SB38 patient Bacteroides 4.095e-01
SB39 patient Bacteroides 5.037e-01
SB4 patient Bacteroides 9.292e-01
SB40 control Bacteroides 4.955e-01
SB41 patient Bacteroides 8.674e-01
SB42 patient Bacteroides 6.375e-01
SB43 patient Bacteroides 2.885e-01
SB44 patient Bacteroides 8.199e-01
SB45 control Bacteroides 2.115e-03
SB5 patient Bacteroides 8.105e-02
SB6 patient Bacteroides 7.723e-01
SB7 control Bacteroides 4.120e-01
SB8 patient Bacteroides 4.490e-01
SB9 patient Bacteroides 3.976e-02
SB1 control Prevotella 2.046e-03
SB10 control Prevotella 4.438e-01
SB11 patient Prevotella 1.652e-02
SB12 control Prevotella 0.000e+00
SB13 control Prevotella 0.000e+00
SB14 control Prevotella 6.747e-01
SB15 control Prevotella 2.758e-04
SB16 patient Prevotella 4.137e-04
SB17 patient Prevotella 6.822e-01
SB18 patient Prevotella 2.480e-04
SB19 control Prevotella 1.978e-01
SB21 control Prevotella 5.399e-04
SB22 patient Prevotella 0.000e+00
SB23 patient Prevotella 0.000e+00
SB24 control Prevotella 2.151e-03
SB25 control Prevotella 2.131e-03
SB26 control Prevotella 0.000e+00
SB28 patient Prevotella 0.000e+00
SB29 patient Prevotella 3.600e-04
SB3 control Prevotella 3.314e-01
SB30 patient Prevotella 1.009e-04
SB31 control Prevotella 2.198e-04
SB32 control Prevotella 7.741e-04
SB33 control Prevotella 5.743e-05
SB34 patient Prevotella 2.598e-04
SB35 patient Prevotella 0.000e+00
SB36 patient Prevotella 1.804e-01
SB38 patient Prevotella 4.073e-01
SB39 patient Prevotella 0.000e+00
SB4 patient Prevotella 0.000e+00
SB40 control Prevotella 0.000e+00
SB41 patient Prevotella 1.328e-04
SB42 patient Prevotella 0.000e+00
SB43 patient Prevotella 4.502e-01
SB44 patient Prevotella 0.000e+00
SB45 control Prevotella 8.603e-01
SB5 patient Prevotella 8.062e-03
SB6 patient Prevotella 7.416e-04
SB7 control Prevotella 1.415e-04
SB8 patient Prevotella 0.000e+00
SB9 patient Prevotella 1.855e-02
SB1 control Unclassified_Lachnospiraceae 2.637e-02
SB10 control Unclassified_Lachnospiraceae 7.553e-02
SB11 patient Unclassified_Lachnospiraceae 1.116e-02
SB12 control Unclassified_Lachnospiraceae 9.506e-02
SB13 control Unclassified_Lachnospiraceae 1.862e-01
SB14 control Unclassified_Lachnospiraceae 7.117e-02
SB15 control Unclassified_Lachnospiraceae 7.501e-02
SB16 patient Unclassified_Lachnospiraceae 2.938e-02
SB17 patient Unclassified_Lachnospiraceae 1.402e-02
SB18 patient Unclassified_Lachnospiraceae 1.097e-02
SB19 control Unclassified_Lachnospiraceae 5.214e-02
SB21 control Unclassified_Lachnospiraceae 1.109e-01
SB22 patient Unclassified_Lachnospiraceae 1.113e-01
SB23 patient Unclassified_Lachnospiraceae 6.495e-02
SB24 control Unclassified_Lachnospiraceae 3.844e-02
SB25 control Unclassified_Lachnospiraceae 2.323e-02
SB26 control Unclassified_Lachnospiraceae 2.256e-02
SB28 patient Unclassified_Lachnospiraceae 3.934e-03
SB29 patient Unclassified_Lachnospiraceae 3.240e-03
SB3 control Unclassified_Lachnospiraceae 5.534e-02
SB30 patient Unclassified_Lachnospiraceae 8.278e-03
SB31 control Unclassified_Lachnospiraceae 6.396e-02
SB32 control Unclassified_Lachnospiraceae 1.078e-01
SB33 control Unclassified_Lachnospiraceae 4.324e-02
SB34 patient Unclassified_Lachnospiraceae 4.529e-02
SB35 patient Unclassified_Lachnospiraceae 1.204e-03
SB36 patient Unclassified_Lachnospiraceae 0.000e+00
SB38 patient Unclassified_Lachnospiraceae 1.135e-02
SB39 patient Unclassified_Lachnospiraceae 2.995e-02
SB4 patient Unclassified_Lachnospiraceae 6.331e-03
SB40 control Unclassified_Lachnospiraceae 6.498e-02
SB41 patient Unclassified_Lachnospiraceae 1.049e-02
SB42 patient Unclassified_Lachnospiraceae 4.444e-02
SB43 patient Unclassified_Lachnospiraceae 1.844e-03
SB44 patient Unclassified_Lachnospiraceae 3.899e-02
SB45 control Unclassified_Lachnospiraceae 1.763e-02
SB5 patient Unclassified_Lachnospiraceae 9.925e-02
SB6 patient Unclassified_Lachnospiraceae 1.112e-02
SB7 control Unclassified_Lachnospiraceae 5.053e-02
SB8 patient Unclassified_Lachnospiraceae 5.532e-02
SB9 patient Unclassified_Lachnospiraceae 6.172e-02
SB1 control Alistipes 5.342e-02
SB10 control Alistipes 2.614e-02
SB11 patient Alistipes 2.482e-01
SB12 control Alistipes 0.000e+00
SB13 control Alistipes 0.000e+00
SB14 control Alistipes 1.418e-02
SB15 control Alistipes 0.000e+00
SB16 patient Alistipes 0.000e+00
SB17 patient Alistipes 3.344e-03
SB18 patient Alistipes 2.480e-04
SB19 control Alistipes 1.039e-02
SB21 control Alistipes 1.152e-02
SB22 patient Alistipes 8.061e-03
SB23 patient Alistipes 6.092e-02
SB24 control Alistipes 3.071e-01
SB25 control Alistipes 1.162e-01
SB26 control Alistipes 1.064e-01
SB28 patient Alistipes 0.000e+00
SB29 patient Alistipes 2.808e-02
SB3 control Alistipes 2.383e-02
SB30 patient Alistipes 4.487e-02
SB31 control Alistipes 5.861e-03
SB32 control Alistipes 3.902e-02
SB33 control Alistipes 0.000e+00
SB34 patient Alistipes 9.784e-03
SB35 patient Alistipes 0.000e+00
SB36 patient Alistipes 2.740e-02
SB38 patient Alistipes 7.861e-02
SB39 patient Alistipes 1.514e-02
SB4 patient Alistipes 0.000e+00
SB40 control Alistipes 2.642e-02
SB41 patient Alistipes 5.613e-02
SB42 patient Alistipes 0.000e+00
SB43 patient Alistipes 1.058e-02
SB44 patient Alistipes 4.393e-03
SB45 control Alistipes 8.814e-05
SB5 patient Alistipes 0.000e+00
SB6 patient Alistipes 3.522e-02
SB7 control Alistipes 6.419e-02
SB8 patient Alistipes 1.164e-01
SB9 patient Alistipes 0.000e+00
SB1 control Faecalibacterium 2.273e-02
SB10 control Faecalibacterium 5.799e-02
SB11 patient Faecalibacterium 4.018e-03
SB12 control Faecalibacterium 0.000e+00
SB13 control Faecalibacterium 2.421e-02
SB14 control Faecalibacterium 3.571e-02
SB15 control Faecalibacterium 1.193e-02
SB16 patient Faecalibacterium 4.137e-04
SB17 patient Faecalibacterium 2.804e-02
SB18 patient Faecalibacterium 1.550e-03
SB19 control Faecalibacterium 1.059e-01
SB21 control Faecalibacterium 1.195e-01
SB22 patient Faecalibacterium 1.267e-02
SB23 patient Faecalibacterium 2.891e-02
SB24 control Faecalibacterium 1.406e-02
SB25 control Faecalibacterium 2.110e-02
SB26 control Faecalibacterium 3.760e-03
SB28 patient Faecalibacterium 0.000e+00
SB29 patient Faecalibacterium 8.999e-03
SB3 control Faecalibacterium 1.018e-01
SB30 patient Faecalibacterium 1.620e-02
SB31 control Faecalibacterium 4.484e-02
SB32 control Faecalibacterium 5.589e-02
SB33 control Faecalibacterium 3.578e-02
SB34 patient Faecalibacterium 1.030e-02
SB35 patient Faecalibacterium 2.047e-02
SB36 patient Faecalibacterium 4.795e-02
SB38 patient Faecalibacterium 4.735e-03
SB39 patient Faecalibacterium 3.221e-02
SB4 patient Faecalibacterium 1.115e-02
SB40 control Faecalibacterium 2.535e-02
SB41 patient Faecalibacterium 8.897e-03
SB42 patient Faecalibacterium 5.553e-02
SB43 patient Faecalibacterium 3.553e-02
SB44 patient Faecalibacterium 2.252e-02
SB45 control Faecalibacterium 6.522e-03

(1.2.1.3.6.2.2.4.1.1.1) Widget 93. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by Sample.type. Click to see HTML widget file in full window: ./1.2.1.3.6.2.2.4.1.1.1-3235d769ee0Dynamic.Pivot.Table.html

(1.2.1.3.6.2.2.4.1.1.1) Widget 94. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by Sample.type. Click to see HTML widget file in full window: ./1.2.1.3.6.2.2.4.1.1.1-323525c46ceDynamic.Pivot.Table.html

(1.2.1.3.6.2.2.4.1.1.1) Table 90. Summary table. Data grouped by Sample.type. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.3.6.2.2.4.1.1.1-3232aaf92a6.1.2.1.3.6.2.2.4.1.1.csv

feature Sample.type mean sd median incidence
Lachnospiracea_incertae_sedis control 0.0335219 0.029027 2.800e-02 0.94444
Lachnospiracea_incertae_sedis patient 0.0101701 0.011313 4.911e-03 0.91304
Unclassified_Lachnospiraceae control 0.0655540 0.041083 5.965e-02 1.00000
Unclassified_Lachnospiraceae patient 0.0293288 0.031477 1.135e-02 0.95652
Bacteroides control 0.3067667 0.251936 3.274e-01 0.94444
Bacteroides patient 0.5827510 0.287387 6.375e-01 1.00000
Gemmiger control 0.0059795 0.005787 4.956e-03 0.83333
Gemmiger patient 0.0017996 0.003060 3.015e-04 0.56522
Ruminococcus control 0.0570637 0.089643 2.219e-02 0.94444
Ruminococcus patient 0.0051753 0.009151 1.893e-03 0.91304
Unclassified_Ruminococcaceae control 0.0339247 0.031348 2.150e-02 0.94444
Unclassified_Ruminococcaceae patient 0.0123984 0.025370 6.698e-03 1.00000
Unclassified_Firmicutes control 0.0085028 0.010888 3.831e-03 1.00000
Unclassified_Firmicutes patient 0.0024286 0.003396 8.410e-04 0.86957
Unclassified_Bacteria control 0.0143963 0.011932 1.273e-02 1.00000
Unclassified_Bacteria patient 0.0085863 0.018505 3.658e-03 0.95652
Clostridium_IV control 0.0171240 0.021312 1.207e-02 0.94444
Clostridium_IV patient 0.0051572 0.008729 1.461e-03 0.82609
Roseburia control 0.0093204 0.006595 6.719e-03 1.00000
Roseburia patient 0.0052684 0.006228 2.966e-03 0.86957
Dorea control 0.0085626 0.008832 5.340e-03 0.94444
Dorea patient 0.0049215 0.009620 1.112e-03 0.73913
Oscillibacter control 0.0044635 0.005391 3.262e-03 0.88889
Oscillibacter patient 0.0022633 0.003198 1.032e-03 0.78261
Odoribacter control 0.0035311 0.006451 1.477e-04 0.55556
Odoribacter patient 0.0019267 0.004960 0.000e+00 0.26087
Bifidobacterium control 0.0150614 0.044413 1.889e-03 0.83333
Bifidobacterium patient 0.0017907 0.004699 3.015e-04 0.65217
Barnesiella control 0.0026788 0.005378 2.871e-05 0.50000
Barnesiella patient 0.0011158 0.003513 0.000e+00 0.26087
Faecalibacterium control 0.0402492 0.035750 3.053e-02 0.94444
Faecalibacterium patient 0.0272857 0.029759 2.047e-02 0.95652
Prevotella control 0.1397999 0.264522 6.570e-04 0.77778
Prevotella patient 0.0767600 0.182368 2.480e-04 0.60870
Clostridium_XVIII control 0.0044237 0.010249 1.121e-03 0.94444
Clostridium_XVIII patient 0.0035808 0.004204 1.786e-03 0.86957
Blautia control 0.0289371 0.045018 1.644e-02 1.00000
Blautia patient 0.0123540 0.016403 4.067e-03 0.95652
Megamonas control 0.0153668 0.042782 0.000e+00 0.16667
Megamonas patient 0.0021745 0.010405 0.000e+00 0.08696
Alistipes control 0.0447037 0.074383 1.901e-02 0.77778
Alistipes patient 0.0324937 0.056098 9.784e-03 0.69565
Unclassified_Clostridiales control 0.0191043 0.021458 1.279e-02 0.94444
Unclassified_Clostridiales patient 0.0111868 0.014283 7.085e-03 1.00000
Unclassified_Bacteroidales control 0.0022287 0.003932 1.211e-03 0.83333
Unclassified_Bacteroidales patient 0.0063594 0.013756 2.017e-03 1.00000
Parabacteroides control 0.0088394 0.007836 6.610e-03 0.94444
Parabacteroides patient 0.0373501 0.105187 2.651e-03 0.73913
Clostridium_XI control 0.0093565 0.009819 7.265e-03 0.94444
Clostridium_XI patient 0.0174076 0.045710 2.423e-03 0.82609
Akkermansia control 0.0034469 0.006657 0.000e+00 0.38889
Akkermansia patient 0.0105567 0.036854 0.000e+00 0.34783
Phascolarctobacterium control 0.0041073 0.009834 0.000e+00 0.22222
Phascolarctobacterium patient 0.0019338 0.004752 0.000e+00 0.39130
Sutterella control 0.0101164 0.027441 1.351e-03 0.61111
Sutterella patient 0.0065465 0.014865 4.426e-05 0.52174
Unclassified_Prevotellaceae control 0.0023462 0.006777 0.000e+00 0.33333
Unclassified_Prevotellaceae patient 0.0012765 0.005105 0.000e+00 0.21739
Erysipelotrichaceae_incertae_sedis control 0.0011320 0.001596 5.687e-04 0.77778
Erysipelotrichaceae_incertae_sedis patient 0.0200729 0.079990 1.212e-03 0.73913
Clostridium_XlVa control 0.0087277 0.012406 4.857e-03 0.94444
Clostridium_XlVa patient 0.0061832 0.007227 4.820e-03 0.95652
Enterococcus control 0.0033431 0.013146 0.000e+00 0.22222
Enterococcus patient 0.0033912 0.014927 0.000e+00 0.34783
Unclassified_Burkholderiales control 0.0014189 0.003669 0.000e+00 0.22222
Unclassified_Burkholderiales patient 0.0014888 0.004149 0.000e+00 0.17391
Escherichia_Shigella control 0.0099026 0.039532 3.853e-04 0.61111
Escherichia_Shigella patient 0.0141029 0.044061 0.000e+00 0.39130
Streptococcus control 0.0055314 0.017846 4.000e-04 0.83333
Streptococcus patient 0.0021337 0.004859 1.009e-04 0.69565
Clostridium_sensu_stricto control 0.0031234 0.007063 3.666e-04 0.83333
Clostridium_sensu_stricto patient 0.0033437 0.007211 6.071e-05 0.52174
Klebsiella control 0.0051171 0.021503 0.000e+00 0.16667
Klebsiella patient 0.0003720 0.001428 0.000e+00 0.21739
Catenibacterium control 0.0030692 0.011967 0.000e+00 0.11111
Catenibacterium patient 0.0002785 0.001336 0.000e+00 0.04348
Lactobacillus control 0.0101656 0.042700 0.000e+00 0.27778
Lactobacillus patient 0.0003493 0.001159 0.000e+00 0.17391
Unclassified_Enterobacteriaceae control 0.0028637 0.011365 0.000e+00 0.27778
Unclassified_Enterobacteriaceae patient 0.0032363 0.013092 0.000e+00 0.26087

(1.2.1.3.6.2.2.4.1.1.1) Figure 316. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. bar_stacked plot. Image file: plots/32318cd787f.svg.

(1.2.1.3.6.2.2.4.1.1.1) Figure 317. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/3237268461.svg.

(1.2.1.3.6.2.2.4.1.1.1) Figure 318. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/32316c72aa7.svg.

(1.2.1.3.6.2.2.4.1.1.1) Figure 319. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/3236f258326.svg.

(1.2.1.3.6.2.2.4.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.3.6.2.2.4.1.2.1) Figure 320. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/3239f06b1c.svg.

(1.2.1.3.6.2.2.4.1.2.1) Figure 321. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3232a4268fc.svg.

(1.2.1.3.6.2.2.4.1.2.1) Figure 322. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/323691bf19e.svg.

(1.2.1.3.6.2.2.4.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.2.1.3.6.2.2.4.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.3.6.2.2.4.2.1.1) Figure 323. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/32377f7fea0.svg.

(1.2.1.3.6.2.2.4.2.1.1) Figure 324. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3233b5add61.svg.

(1.2.1.3.6.2.2.4.2.1.1) Figure 325. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/3231a20690c.svg.

(1.2.1.3.6.2.2.4.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.3.6.2.2.4.2.2.1) Figure 326. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/323418bf803.svg.

(1.2.1.3.6.2.2.4.2.2.1) Figure 327. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3237c3582ee.svg.

(1.2.1.3.6.2.2.4.2.2.1) Figure 328. Abundance. Data grouped by Sample.type. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/3233dbc3bf3.svg.

(1.2.1.3.6.2.3) Grouping variables Sample.type,age.quant
(1.2.1.3.6.2.4) Iterating over Abundance. profile sorting order
(1.2.1.3.6.2.4.1) Abundance. profile sorting order: average abundance
(1.2.1.3.6.2.4.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.2.1.3.6.2.4.2.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.2.1.3.6.2.4.2.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.3.6.2.4.2.1.1.0) Table 91. Data table used for plots. Data grouped by Sample.type,age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.3.6.2.4.2.1.1.0-32341cbc353.1.2.1.3.6.2.4.2.1.1.csv

.record.id Sample.type age.quant feature Abundance
SB1 control (8.71,15.3] Bacteroides 6.247e-01
SB10 control (15.3,26.4] Bacteroides 6.327e-02
SB11 patient (8.71,15.3] Bacteroides 4.295e-01
SB12 control [3.18,6.27] Bacteroides 0.000e+00
SB13 control (6.27,8.71] Bacteroides 2.126e-01
SB14 control (8.71,15.3] Bacteroides 7.465e-02
SB15 control (8.71,15.3] Bacteroides 5.242e-01
SB16 patient (15.3,26.4] Bacteroides 8.130e-01
SB17 patient (15.3,26.4] Bacteroides 1.435e-01
SB18 patient (15.3,26.4] Bacteroides 8.611e-01
SB19 control (15.3,26.4] Bacteroides 1.797e-02
SB21 control [3.18,6.27] Bacteroides 1.440e-01
SB22 patient (6.27,8.71] Bacteroides 5.831e-01
SB23 patient (15.3,26.4] Bacteroides 6.404e-01
SB24 control (8.71,15.3] Bacteroides 3.247e-01
SB25 control (8.71,15.3] Bacteroides 4.587e-01
SB26 control (6.27,8.71] Bacteroides 3.742e-01
SB28 patient (6.27,8.71] Bacteroides 1.747e-01
SB29 patient (6.27,8.71] Bacteroides 8.679e-01
SB3 control [3.18,6.27] Bacteroides 2.611e-02
SB30 patient (6.27,8.71] Bacteroides 8.108e-01
SB31 control (8.71,15.3] Bacteroides 6.218e-01
SB32 control (15.3,26.4] Bacteroides 3.301e-01
SB33 control (8.71,15.3] Bacteroides 8.153e-01
SB34 patient (15.3,26.4] Bacteroides 7.735e-01
SB35 patient (8.71,15.3] Bacteroides 9.643e-01
SB36 patient [3.18,6.27] Bacteroides 5.438e-01
SB38 patient (15.3,26.4] Bacteroides 4.095e-01
SB39 patient (8.71,15.3] Bacteroides 5.037e-01
SB4 patient [3.18,6.27] Bacteroides 9.292e-01
SB40 control [3.18,6.27] Bacteroides 4.955e-01
SB41 patient (6.27,8.71] Bacteroides 8.674e-01
SB42 patient [3.18,6.27] Bacteroides 6.375e-01
SB43 patient (15.3,26.4] Bacteroides 2.885e-01
SB44 patient [3.18,6.27] Bacteroides 8.199e-01
SB45 control (15.3,26.4] Bacteroides 2.115e-03
SB5 patient (15.3,26.4] Bacteroides 8.105e-02
SB6 patient (6.27,8.71] Bacteroides 7.723e-01
SB7 control (15.3,26.4] Bacteroides 4.120e-01
SB8 patient (15.3,26.4] Bacteroides 4.490e-01
SB9 patient (8.71,15.3] Bacteroides 3.976e-02
SB1 control (8.71,15.3] Prevotella 2.046e-03
SB10 control (15.3,26.4] Prevotella 4.438e-01
SB11 patient (8.71,15.3] Prevotella 1.652e-02
SB12 control [3.18,6.27] Prevotella 0.000e+00
SB13 control (6.27,8.71] Prevotella 0.000e+00
SB14 control (8.71,15.3] Prevotella 6.747e-01
SB15 control (8.71,15.3] Prevotella 2.758e-04
SB16 patient (15.3,26.4] Prevotella 4.137e-04
SB17 patient (15.3,26.4] Prevotella 6.822e-01
SB18 patient (15.3,26.4] Prevotella 2.480e-04
SB19 control (15.3,26.4] Prevotella 1.978e-01
SB21 control [3.18,6.27] Prevotella 5.399e-04
SB22 patient (6.27,8.71] Prevotella 0.000e+00
SB23 patient (15.3,26.4] Prevotella 0.000e+00
SB24 control (8.71,15.3] Prevotella 2.151e-03
SB25 control (8.71,15.3] Prevotella 2.131e-03
SB26 control (6.27,8.71] Prevotella 0.000e+00
SB28 patient (6.27,8.71] Prevotella 0.000e+00
SB29 patient (6.27,8.71] Prevotella 3.600e-04
SB3 control [3.18,6.27] Prevotella 3.314e-01
SB30 patient (6.27,8.71] Prevotella 1.009e-04
SB31 control (8.71,15.3] Prevotella 2.198e-04
SB32 control (15.3,26.4] Prevotella 7.741e-04
SB33 control (8.71,15.3] Prevotella 5.743e-05
SB34 patient (15.3,26.4] Prevotella 2.598e-04
SB35 patient (8.71,15.3] Prevotella 0.000e+00
SB36 patient [3.18,6.27] Prevotella 1.804e-01
SB38 patient (15.3,26.4] Prevotella 4.073e-01
SB39 patient (8.71,15.3] Prevotella 0.000e+00
SB4 patient [3.18,6.27] Prevotella 0.000e+00
SB40 control [3.18,6.27] Prevotella 0.000e+00
SB41 patient (6.27,8.71] Prevotella 1.328e-04
SB42 patient [3.18,6.27] Prevotella 0.000e+00
SB43 patient (15.3,26.4] Prevotella 4.502e-01
SB44 patient [3.18,6.27] Prevotella 0.000e+00
SB45 control (15.3,26.4] Prevotella 8.603e-01
SB5 patient (15.3,26.4] Prevotella 8.062e-03
SB6 patient (6.27,8.71] Prevotella 7.416e-04
SB7 control (15.3,26.4] Prevotella 1.415e-04
SB8 patient (15.3,26.4] Prevotella 0.000e+00
SB9 patient (8.71,15.3] Prevotella 1.855e-02
SB1 control (8.71,15.3] Unclassified_Lachnospiraceae 2.637e-02
SB10 control (15.3,26.4] Unclassified_Lachnospiraceae 7.553e-02
SB11 patient (8.71,15.3] Unclassified_Lachnospiraceae 1.116e-02
SB12 control [3.18,6.27] Unclassified_Lachnospiraceae 9.506e-02
SB13 control (6.27,8.71] Unclassified_Lachnospiraceae 1.862e-01
SB14 control (8.71,15.3] Unclassified_Lachnospiraceae 7.117e-02
SB15 control (8.71,15.3] Unclassified_Lachnospiraceae 7.501e-02
SB16 patient (15.3,26.4] Unclassified_Lachnospiraceae 2.938e-02
SB17 patient (15.3,26.4] Unclassified_Lachnospiraceae 1.402e-02
SB18 patient (15.3,26.4] Unclassified_Lachnospiraceae 1.097e-02
SB19 control (15.3,26.4] Unclassified_Lachnospiraceae 5.214e-02
SB21 control [3.18,6.27] Unclassified_Lachnospiraceae 1.109e-01
SB22 patient (6.27,8.71] Unclassified_Lachnospiraceae 1.113e-01
SB23 patient (15.3,26.4] Unclassified_Lachnospiraceae 6.495e-02
SB24 control (8.71,15.3] Unclassified_Lachnospiraceae 3.844e-02
SB25 control (8.71,15.3] Unclassified_Lachnospiraceae 2.323e-02
SB26 control (6.27,8.71] Unclassified_Lachnospiraceae 2.256e-02
SB28 patient (6.27,8.71] Unclassified_Lachnospiraceae 3.934e-03
SB29 patient (6.27,8.71] Unclassified_Lachnospiraceae 3.240e-03
SB3 control [3.18,6.27] Unclassified_Lachnospiraceae 5.534e-02
SB30 patient (6.27,8.71] Unclassified_Lachnospiraceae 8.278e-03
SB31 control (8.71,15.3] Unclassified_Lachnospiraceae 6.396e-02
SB32 control (15.3,26.4] Unclassified_Lachnospiraceae 1.078e-01
SB33 control (8.71,15.3] Unclassified_Lachnospiraceae 4.324e-02
SB34 patient (15.3,26.4] Unclassified_Lachnospiraceae 4.529e-02
SB35 patient (8.71,15.3] Unclassified_Lachnospiraceae 1.204e-03
SB36 patient [3.18,6.27] Unclassified_Lachnospiraceae 0.000e+00
SB38 patient (15.3,26.4] Unclassified_Lachnospiraceae 1.135e-02
SB39 patient (8.71,15.3] Unclassified_Lachnospiraceae 2.995e-02
SB4 patient [3.18,6.27] Unclassified_Lachnospiraceae 6.331e-03
SB40 control [3.18,6.27] Unclassified_Lachnospiraceae 6.498e-02
SB41 patient (6.27,8.71] Unclassified_Lachnospiraceae 1.049e-02
SB42 patient [3.18,6.27] Unclassified_Lachnospiraceae 4.444e-02
SB43 patient (15.3,26.4] Unclassified_Lachnospiraceae 1.844e-03
SB44 patient [3.18,6.27] Unclassified_Lachnospiraceae 3.899e-02
SB45 control (15.3,26.4] Unclassified_Lachnospiraceae 1.763e-02
SB5 patient (15.3,26.4] Unclassified_Lachnospiraceae 9.925e-02
SB6 patient (6.27,8.71] Unclassified_Lachnospiraceae 1.112e-02
SB7 control (15.3,26.4] Unclassified_Lachnospiraceae 5.053e-02
SB8 patient (15.3,26.4] Unclassified_Lachnospiraceae 5.532e-02
SB9 patient (8.71,15.3] Unclassified_Lachnospiraceae 6.172e-02
SB1 control (8.71,15.3] Alistipes 5.342e-02
SB10 control (15.3,26.4] Alistipes 2.614e-02
SB11 patient (8.71,15.3] Alistipes 2.482e-01
SB12 control [3.18,6.27] Alistipes 0.000e+00
SB13 control (6.27,8.71] Alistipes 0.000e+00
SB14 control (8.71,15.3] Alistipes 1.418e-02
SB15 control (8.71,15.3] Alistipes 0.000e+00
SB16 patient (15.3,26.4] Alistipes 0.000e+00
SB17 patient (15.3,26.4] Alistipes 3.344e-03
SB18 patient (15.3,26.4] Alistipes 2.480e-04
SB19 control (15.3,26.4] Alistipes 1.039e-02
SB21 control [3.18,6.27] Alistipes 1.152e-02
SB22 patient (6.27,8.71] Alistipes 8.061e-03
SB23 patient (15.3,26.4] Alistipes 6.092e-02
SB24 control (8.71,15.3] Alistipes 3.071e-01
SB25 control (8.71,15.3] Alistipes 1.162e-01
SB26 control (6.27,8.71] Alistipes 1.064e-01
SB28 patient (6.27,8.71] Alistipes 0.000e+00
SB29 patient (6.27,8.71] Alistipes 2.808e-02
SB3 control [3.18,6.27] Alistipes 2.383e-02
SB30 patient (6.27,8.71] Alistipes 4.487e-02
SB31 control (8.71,15.3] Alistipes 5.861e-03
SB32 control (15.3,26.4] Alistipes 3.902e-02
SB33 control (8.71,15.3] Alistipes 0.000e+00
SB34 patient (15.3,26.4] Alistipes 9.784e-03
SB35 patient (8.71,15.3] Alistipes 0.000e+00
SB36 patient [3.18,6.27] Alistipes 2.740e-02
SB38 patient (15.3,26.4] Alistipes 7.861e-02
SB39 patient (8.71,15.3] Alistipes 1.514e-02
SB4 patient [3.18,6.27] Alistipes 0.000e+00
SB40 control [3.18,6.27] Alistipes 2.642e-02
SB41 patient (6.27,8.71] Alistipes 5.613e-02
SB42 patient [3.18,6.27] Alistipes 0.000e+00
SB43 patient (15.3,26.4] Alistipes 1.058e-02
SB44 patient [3.18,6.27] Alistipes 4.393e-03
SB45 control (15.3,26.4] Alistipes 8.814e-05
SB5 patient (15.3,26.4] Alistipes 0.000e+00
SB6 patient (6.27,8.71] Alistipes 3.522e-02
SB7 control (15.3,26.4] Alistipes 6.419e-02
SB8 patient (15.3,26.4] Alistipes 1.164e-01
SB9 patient (8.71,15.3] Alistipes 0.000e+00
SB1 control (8.71,15.3] Faecalibacterium 2.273e-02
SB10 control (15.3,26.4] Faecalibacterium 5.799e-02
SB11 patient (8.71,15.3] Faecalibacterium 4.018e-03
SB12 control [3.18,6.27] Faecalibacterium 0.000e+00
SB13 control (6.27,8.71] Faecalibacterium 2.421e-02
SB14 control (8.71,15.3] Faecalibacterium 3.571e-02
SB15 control (8.71,15.3] Faecalibacterium 1.193e-02
SB16 patient (15.3,26.4] Faecalibacterium 4.137e-04
SB17 patient (15.3,26.4] Faecalibacterium 2.804e-02
SB18 patient (15.3,26.4] Faecalibacterium 1.550e-03
SB19 control (15.3,26.4] Faecalibacterium 1.059e-01
SB21 control [3.18,6.27] Faecalibacterium 1.195e-01
SB22 patient (6.27,8.71] Faecalibacterium 1.267e-02
SB23 patient (15.3,26.4] Faecalibacterium 2.891e-02
SB24 control (8.71,15.3] Faecalibacterium 1.406e-02
SB25 control (8.71,15.3] Faecalibacterium 2.110e-02
SB26 control (6.27,8.71] Faecalibacterium 3.760e-03
SB28 patient (6.27,8.71] Faecalibacterium 0.000e+00
SB29 patient (6.27,8.71] Faecalibacterium 8.999e-03
SB3 control [3.18,6.27] Faecalibacterium 1.018e-01
SB30 patient (6.27,8.71] Faecalibacterium 1.620e-02
SB31 control (8.71,15.3] Faecalibacterium 4.484e-02
SB32 control (15.3,26.4] Faecalibacterium 5.589e-02
SB33 control (8.71,15.3] Faecalibacterium 3.578e-02
SB34 patient (15.3,26.4] Faecalibacterium 1.030e-02
SB35 patient (8.71,15.3] Faecalibacterium 2.047e-02
SB36 patient [3.18,6.27] Faecalibacterium 4.795e-02
SB38 patient (15.3,26.4] Faecalibacterium 4.735e-03
SB39 patient (8.71,15.3] Faecalibacterium 3.221e-02
SB4 patient [3.18,6.27] Faecalibacterium 1.115e-02
SB40 control [3.18,6.27] Faecalibacterium 2.535e-02
SB41 patient (6.27,8.71] Faecalibacterium 8.897e-03
SB42 patient [3.18,6.27] Faecalibacterium 5.553e-02
SB43 patient (15.3,26.4] Faecalibacterium 3.553e-02
SB44 patient [3.18,6.27] Faecalibacterium 2.252e-02
SB45 control (15.3,26.4] Faecalibacterium 6.522e-03

(1.2.1.3.6.2.4.2.1.1.1) Widget 95. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by Sample.type,age.quant. Click to see HTML widget file in full window: ./1.2.1.3.6.2.4.2.1.1.1-323239d4c37Dynamic.Pivot.Table.html

(1.2.1.3.6.2.4.2.1.1.1) Widget 96. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by Sample.type,age.quant. Click to see HTML widget file in full window: ./1.2.1.3.6.2.4.2.1.1.1-3236d49ca8Dynamic.Pivot.Table.html

(1.2.1.3.6.2.4.2.1.1.1) Table 92. Summary table. Data grouped by Sample.type,age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.3.6.2.4.2.1.1.1-323546ba68d.1.2.1.3.6.2.4.2.1.1.csv

feature Sample.type age.quant mean sd median incidence
Bacteroides control [3.18,6.27] 1.664e-01 2.282e-01 8.504e-02 0.7500
Bacteroides control (6.27,8.71] 2.934e-01 1.142e-01 2.934e-01 1.0000
Bacteroides control (8.71,15.3] 4.920e-01 2.392e-01 5.242e-01 1.0000
Bacteroides control (15.3,26.4] 1.651e-01 1.915e-01 6.327e-02 1.0000
Bacteroides patient [3.18,6.27] 7.326e-01 1.741e-01 7.287e-01 1.0000
Bacteroides patient (6.27,8.71] 6.794e-01 2.686e-01 7.916e-01 1.0000
Bacteroides patient (8.71,15.3] 4.843e-01 3.792e-01 4.666e-01 1.0000
Bacteroides patient (15.3,26.4] 4.955e-01 2.917e-01 4.490e-01 1.0000
Prevotella control [3.18,6.27] 8.298e-02 1.656e-01 2.699e-04 0.5000
Prevotella control (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Prevotella control (8.71,15.3] 9.737e-02 2.546e-01 2.046e-03 1.0000
Prevotella control (15.3,26.4] 3.006e-01 3.621e-01 1.978e-01 1.0000
Prevotella patient [3.18,6.27] 4.509e-02 9.018e-02 0.000e+00 0.2500
Prevotella patient (6.27,8.71] 2.225e-04 2.864e-04 1.169e-04 0.6667
Prevotella patient (8.71,15.3] 8.768e-03 1.016e-02 8.259e-03 0.5000
Prevotella patient (15.3,26.4] 1.721e-01 2.664e-01 4.137e-04 0.7778
Unclassified_Lachnospiraceae control [3.18,6.27] 8.156e-02 2.584e-02 8.002e-02 1.0000
Unclassified_Lachnospiraceae control (6.27,8.71] 1.044e-01 1.157e-01 1.044e-01 1.0000
Unclassified_Lachnospiraceae control (8.71,15.3] 4.877e-02 2.126e-02 4.324e-02 1.0000
Unclassified_Lachnospiraceae control (15.3,26.4] 6.072e-02 3.342e-02 5.214e-02 1.0000
Unclassified_Lachnospiraceae patient [3.18,6.27] 2.244e-02 2.252e-02 2.266e-02 0.7500
Unclassified_Lachnospiraceae patient (6.27,8.71] 2.473e-02 4.255e-02 9.384e-03 1.0000
Unclassified_Lachnospiraceae patient (8.71,15.3] 2.601e-02 2.662e-02 2.056e-02 1.0000
Unclassified_Lachnospiraceae patient (15.3,26.4] 3.693e-02 3.205e-02 2.938e-02 1.0000
Alistipes control [3.18,6.27] 1.544e-02 1.218e-02 1.768e-02 0.7500
Alistipes control (6.27,8.71] 5.318e-02 7.521e-02 5.318e-02 0.5000
Alistipes control (8.71,15.3] 7.096e-02 1.123e-01 1.418e-02 0.7143
Alistipes control (15.3,26.4] 2.796e-02 2.512e-02 2.614e-02 1.0000
Alistipes patient [3.18,6.27] 7.948e-03 1.313e-02 2.197e-03 0.5000
Alistipes patient (6.27,8.71] 2.873e-02 2.148e-02 3.165e-02 0.8333
Alistipes patient (8.71,15.3] 6.584e-02 1.218e-01 7.568e-03 0.5000
Alistipes patient (15.3,26.4] 3.109e-02 4.323e-02 9.784e-03 0.7778
Faecalibacterium control [3.18,6.27] 6.165e-02 5.794e-02 6.355e-02 0.7500
Faecalibacterium control (6.27,8.71] 1.398e-02 1.446e-02 1.398e-02 1.0000
Faecalibacterium control (8.71,15.3] 2.659e-02 1.237e-02 2.273e-02 1.0000
Faecalibacterium control (15.3,26.4] 5.276e-02 3.615e-02 5.589e-02 1.0000
Faecalibacterium patient [3.18,6.27] 3.429e-02 2.091e-02 3.523e-02 1.0000
Faecalibacterium patient (6.27,8.71] 1.731e-02 2.023e-02 1.083e-02 0.8333
Faecalibacterium patient (8.71,15.3] 3.093e-02 2.669e-02 2.634e-02 1.0000
Faecalibacterium patient (15.3,26.4] 2.920e-02 4.048e-02 2.186e-02 1.0000
Ruminococcus control [3.18,6.27] 7.306e-02 8.032e-02 5.461e-02 0.7500
Ruminococcus control (6.27,8.71] 1.708e-01 2.154e-01 1.708e-01 1.0000
Ruminococcus control (8.71,15.3] 1.832e-02 1.236e-02 1.987e-02 1.0000
Ruminococcus control (15.3,26.4] 5.302e-02 9.006e-02 1.039e-02 1.0000
Ruminococcus patient [3.18,6.27] 3.007e-03 2.731e-03 2.482e-03 1.0000
Ruminococcus patient (6.27,8.71] 8.696e-03 1.685e-02 2.294e-03 0.8333
Ruminococcus patient (8.71,15.3] 2.804e-03 3.576e-03 1.591e-03 0.7500
Ruminococcus patient (15.3,26.4] 4.845e-03 5.546e-03 2.959e-03 1.0000
Parabacteroides control [3.18,6.27] 5.456e-03 6.324e-03 4.163e-03 0.7500
Parabacteroides control (6.27,8.71] 1.441e-02 1.229e-02 1.441e-02 1.0000
Parabacteroides control (8.71,15.3] 1.106e-02 8.651e-03 8.687e-03 1.0000
Parabacteroides control (15.3,26.4] 6.214e-03 6.063e-03 2.114e-03 1.0000
Parabacteroides patient [3.18,6.27] 1.256e-02 2.511e-02 0.000e+00 0.2500
Parabacteroides patient (6.27,8.71] 9.182e-02 2.047e-01 1.120e-02 0.8333
Parabacteroides patient (8.71,15.3] 1.677e-02 1.717e-02 1.650e-02 1.0000
Parabacteroides patient (15.3,26.4] 2.120e-02 2.906e-02 1.682e-03 0.7778
Unclassified_Ruminococcaceae control [3.18,6.27] 5.179e-02 4.741e-02 5.002e-02 0.7500
Unclassified_Ruminococcaceae control (6.27,8.71] 1.940e-02 6.720e-04 1.940e-02 1.0000
Unclassified_Ruminococcaceae control (8.71,15.3] 2.411e-02 2.330e-02 9.541e-03 1.0000
Unclassified_Ruminococcaceae control (15.3,26.4] 3.919e-02 3.238e-02 2.240e-02 1.0000
Unclassified_Ruminococcaceae patient [3.18,6.27] 6.699e-03 7.952e-03 3.678e-03 1.0000
Unclassified_Ruminococcaceae patient (6.27,8.71] 8.961e-03 7.990e-03 8.742e-03 1.0000
Unclassified_Ruminococcaceae patient (8.71,15.3] 9.735e-03 9.012e-03 8.319e-03 1.0000
Unclassified_Ruminococcaceae patient (15.3,26.4] 1.841e-02 4.008e-02 3.859e-03 1.0000
Lachnospiracea_incertae_sedis control [3.18,6.27] 4.080e-02 4.068e-02 3.300e-02 0.7500
Lachnospiracea_incertae_sedis control (6.27,8.71] 5.852e-02 6.414e-02 5.852e-02 1.0000
Lachnospiracea_incertae_sedis control (8.71,15.3] 2.262e-02 1.203e-02 1.850e-02 1.0000
Lachnospiracea_incertae_sedis control (15.3,26.4] 3.297e-02 2.281e-02 3.202e-02 1.0000
Lachnospiracea_incertae_sedis patient [3.18,6.27] 9.311e-03 1.193e-02 5.389e-03 1.0000
Lachnospiracea_incertae_sedis patient (6.27,8.71] 6.296e-03 1.131e-02 2.195e-03 0.8333
Lachnospiracea_incertae_sedis patient (8.71,15.3] 7.813e-03 8.026e-03 6.159e-03 0.7500
Lachnospiracea_incertae_sedis patient (15.3,26.4] 1.418e-02 1.273e-02 1.241e-02 1.0000
Blautia control [3.18,6.27] 7.775e-02 8.403e-02 5.196e-02 1.0000
Blautia control (6.27,8.71] 1.640e-02 1.788e-02 1.640e-02 1.0000
Blautia control (8.71,15.3] 1.226e-02 6.669e-03 9.245e-03 1.0000
Blautia control (15.3,26.4] 1.825e-02 8.970e-03 2.245e-02 1.0000
Blautia patient [3.18,6.27] 6.120e-03 5.998e-03 4.531e-03 1.0000
Blautia patient (6.27,8.71] 9.902e-03 1.677e-02 2.498e-03 0.8333
Blautia patient (8.71,15.3] 1.341e-02 2.265e-02 2.950e-03 1.0000
Blautia patient (15.3,26.4] 1.629e-02 1.779e-02 7.717e-03 1.0000
Unclassified_Clostridiales control [3.18,6.27] 2.254e-02 2.069e-02 2.438e-02 0.7500
Unclassified_Clostridiales control (6.27,8.71] 5.386e-02 5.641e-02 5.386e-02 1.0000
Unclassified_Clostridiales control (8.71,15.3] 1.106e-02 5.696e-03 1.137e-02 1.0000
Unclassified_Clostridiales control (15.3,26.4] 1.372e-02 5.152e-03 1.677e-02 1.0000
Unclassified_Clostridiales patient [3.18,6.27] 1.822e-02 2.650e-02 6.996e-03 1.0000
Unclassified_Clostridiales patient (6.27,8.71] 8.724e-03 1.271e-02 4.363e-03 1.0000
Unclassified_Clostridiales patient (8.71,15.3] 1.004e-02 9.992e-03 7.561e-03 1.0000
Unclassified_Clostridiales patient (15.3,26.4] 1.021e-02 1.132e-02 7.447e-03 1.0000
Clostridium_XI control [3.18,6.27] 1.041e-02 8.851e-03 1.047e-02 0.7500
Clostridium_XI control (6.27,8.71] 8.848e-03 4.916e-03 8.848e-03 1.0000
Clostridium_XI control (8.71,15.3] 6.620e-03 5.359e-03 6.454e-03 1.0000
Clostridium_XI control (15.3,26.4] 1.255e-02 1.658e-02 7.277e-03 1.0000
Clostridium_XI patient [3.18,6.27] 2.872e-03 2.885e-03 2.435e-03 1.0000
Clostridium_XI patient (6.27,8.71] 9.048e-03 1.740e-02 2.111e-03 0.8333
Clostridium_XI patient (8.71,15.3] 2.091e-02 2.009e-02 2.128e-02 0.7500
Clostridium_XI patient (15.3,26.4] 2.788e-02 7.152e-02 1.655e-03 0.7778
Escherichia_Shigella control [3.18,6.27] 4.225e-02 8.399e-02 3.858e-04 0.7500
Escherichia_Shigella control (6.27,8.71] 2.201e-04 3.112e-04 2.201e-04 0.5000
Escherichia_Shigella control (8.71,15.3] 9.291e-04 1.675e-03 4.137e-04 0.7143
Escherichia_Shigella control (15.3,26.4] 4.581e-04 7.638e-04 0.000e+00 0.4000
Escherichia_Shigella patient [3.18,6.27] 2.746e-04 5.491e-04 0.000e+00 0.2500
Escherichia_Shigella patient (6.27,8.71] 2.917e-02 7.128e-02 0.000e+00 0.3333
Escherichia_Shigella patient (8.71,15.3] 7.742e-04 1.268e-03 2.232e-04 0.5000
Escherichia_Shigella patient (15.3,26.4] 1.612e-02 4.247e-02 0.000e+00 0.4444
Erysipelotrichaceae_incertae_sedis control [3.18,6.27] 6.939e-04 5.897e-04 6.679e-04 0.7500
Erysipelotrichaceae_incertae_sedis control (6.27,8.71] 1.552e-03 2.953e-04 1.552e-03 1.0000
Erysipelotrichaceae_incertae_sedis control (8.71,15.3] 1.041e-03 2.020e-03 2.068e-04 0.7143
Erysipelotrichaceae_incertae_sedis control (15.3,26.4] 1.442e-03 2.003e-03 4.954e-04 0.8000
Erysipelotrichaceae_incertae_sedis patient [3.18,6.27] 1.608e-03 1.653e-03 1.256e-03 0.7500
Erysipelotrichaceae_incertae_sedis patient (6.27,8.71] 2.872e-03 3.797e-03 1.658e-03 0.8333
Erysipelotrichaceae_incertae_sedis patient (8.71,15.3] 9.806e-02 1.916e-01 3.382e-03 0.5000
Erysipelotrichaceae_incertae_sedis patient (15.3,26.4] 5.087e-03 1.137e-02 1.212e-03 0.7778
Unclassified_Bacteria control [3.18,6.27] 3.150e-02 1.296e-02 3.515e-02 1.0000
Unclassified_Bacteria control (6.27,8.71] 1.413e-02 3.183e-03 1.413e-02 1.0000
Unclassified_Bacteria control (8.71,15.3] 8.804e-03 6.898e-03 4.902e-03 1.0000
Unclassified_Bacteria control (15.3,26.4] 8.650e-03 4.090e-03 6.967e-03 1.0000
Unclassified_Bacteria patient [3.18,6.27] 2.542e-02 4.342e-02 4.886e-03 1.0000
Unclassified_Bacteria patient (6.27,8.71] 6.112e-03 7.995e-03 2.421e-03 1.0000
Unclassified_Bacteria patient (8.71,15.3] 4.959e-03 3.460e-03 5.899e-03 0.7500
Unclassified_Bacteria patient (15.3,26.4] 4.365e-03 4.145e-03 3.658e-03 1.0000
Clostridium_IV control [3.18,6.27] 2.029e-02 1.902e-02 1.826e-02 0.7500
Clostridium_IV control (6.27,8.71] 3.086e-02 1.939e-03 3.086e-02 1.0000
Clostridium_IV control (8.71,15.3] 1.580e-02 3.080e-02 1.999e-03 1.0000
Clostridium_IV control (15.3,26.4] 1.096e-02 8.970e-03 1.192e-02 1.0000
Clostridium_IV patient [3.18,6.27] 3.903e-04 3.147e-04 4.388e-04 0.7500
Clostridium_IV patient (6.27,8.71] 8.575e-03 1.306e-02 3.401e-03 0.8333
Clostridium_IV patient (8.71,15.3] 4.282e-03 5.078e-03 3.571e-03 0.5000
Clostridium_IV patient (15.3,26.4] 5.386e-03 8.526e-03 2.246e-03 1.0000
Sutterella control [3.18,6.27] 1.295e-03 2.591e-03 0.000e+00 0.2500
Sutterella control (6.27,8.71] 1.343e-04 1.899e-04 1.343e-04 0.5000
Sutterella control (8.71,15.3] 1.822e-02 4.324e-02 1.780e-03 0.7143
Sutterella control (15.3,26.4] 9.828e-03 1.218e-02 1.761e-03 0.8000
Sutterella patient [3.18,6.27] 1.493e-02 2.862e-02 9.424e-04 0.7500
Sutterella patient (6.27,8.71] 3.261e-05 6.084e-05 0.000e+00 0.3333
Sutterella patient (8.71,15.3] 2.577e-03 2.410e-03 2.577e-03 0.7500
Sutterella patient (15.3,26.4] 8.927e-03 1.474e-02 0.000e+00 0.4444
Megamonas control [3.18,6.27] 0.000e+00 0.000e+00 0.000e+00 0.0000
Megamonas control (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Megamonas control (8.71,15.3] 2.082e-02 5.034e-02 0.000e+00 0.2857
Megamonas control (15.3,26.4] 2.618e-02 5.853e-02 0.000e+00 0.2000
Megamonas patient [3.18,6.27] 0.000e+00 0.000e+00 0.000e+00 0.0000
Megamonas patient (6.27,8.71] 8.317e-03 2.037e-02 0.000e+00 0.1667
Megamonas patient (8.71,15.3] 0.000e+00 0.000e+00 0.000e+00 0.0000
Megamonas patient (15.3,26.4] 1.210e-05 3.631e-05 0.000e+00 0.1111
Bifidobacterium control [3.18,6.27] 5.198e-02 9.218e-02 8.726e-03 1.0000
Bifidobacterium control (6.27,8.71] 6.207e-03 1.181e-03 6.207e-03 1.0000
Bifidobacterium control (8.71,15.3] 2.163e-03 2.035e-03 1.586e-03 1.0000
Bifidobacterium control (15.3,26.4] 7.125e-03 1.523e-02 0.000e+00 0.4000
Bifidobacterium patient [3.18,6.27] 1.029e-03 1.508e-03 4.253e-04 0.7500
Bifidobacterium patient (6.27,8.71] 4.403e-04 6.691e-04 2.524e-05 0.5000
Bifidobacterium patient (8.71,15.3] 7.789e-03 1.000e-02 5.112e-03 0.5000
Bifidobacterium patient (15.3,26.4] 3.633e-04 3.749e-04 3.363e-04 0.7778
Akkermansia control [3.18,6.27] 5.723e-03 8.249e-03 2.699e-03 0.5000
Akkermansia control (6.27,8.71] 4.536e-03 6.035e-03 4.536e-03 1.0000
Akkermansia control (8.71,15.3] 4.297e-03 8.418e-03 0.000e+00 0.4286
Akkermansia control (15.3,26.4] 0.000e+00 0.000e+00 0.000e+00 0.0000
Akkermansia patient [3.18,6.27] 4.178e-04 8.357e-04 0.000e+00 0.2500
Akkermansia patient (6.27,8.71] 5.779e-03 1.116e-02 4.426e-05 0.5000
Akkermansia patient (8.71,15.3] 5.159e-02 8.361e-02 1.558e-02 0.7500
Akkermansia patient (15.3,26.4] 1.079e-05 3.236e-05 0.000e+00 0.1111
Clostridium_XlVa control [3.18,6.27] 4.344e-03 4.239e-03 4.548e-03 0.7500
Clostridium_XlVa control (6.27,8.71] 2.718e-02 3.502e-02 2.718e-02 1.0000
Clostridium_XlVa control (8.71,15.3] 6.214e-03 7.190e-03 2.869e-03 1.0000
Clostridium_XlVa control (15.3,26.4] 8.374e-03 7.482e-03 6.518e-03 1.0000
Clostridium_XlVa patient [3.18,6.27] 1.023e-02 8.946e-03 9.330e-03 1.0000
Clostridium_XlVa patient (6.27,8.71] 3.970e-03 3.585e-03 3.827e-03 0.8333
Clostridium_XlVa patient (8.71,15.3] 4.310e-03 4.247e-03 4.233e-03 1.0000
Clostridium_XlVa patient (15.3,26.4] 6.692e-03 9.215e-03 3.867e-03 1.0000
Roseburia control [3.18,6.27] 9.964e-03 5.332e-03 9.239e-03 1.0000
Roseburia control (6.27,8.71] 1.225e-02 1.504e-02 1.225e-02 1.0000
Roseburia control (8.71,15.3] 8.139e-03 5.343e-03 5.968e-03 1.0000
Roseburia control (15.3,26.4] 9.287e-03 7.550e-03 6.298e-03 1.0000
Roseburia patient [3.18,6.27] 4.349e-03 4.891e-03 3.068e-03 0.7500
Roseburia patient (6.27,8.71] 4.317e-03 6.315e-03 2.265e-03 0.8333
Roseburia patient (8.71,15.3] 6.862e-03 9.403e-03 3.111e-03 1.0000
Roseburia patient (15.3,26.4] 5.603e-03 6.092e-03 3.400e-03 0.8889
Dorea control [3.18,6.27] 5.460e-03 5.500e-03 4.802e-03 0.7500
Dorea control (6.27,8.71] 1.061e-02 7.406e-03 1.061e-02 1.0000
Dorea control (8.71,15.3] 9.462e-03 1.047e-02 4.476e-03 1.0000
Dorea control (15.3,26.4] 8.967e-03 1.083e-02 5.307e-03 1.0000
Dorea patient [3.18,6.27] 9.027e-04 1.176e-03 5.698e-04 0.5000
Dorea patient (6.27,8.71] 2.684e-03 5.471e-03 5.341e-04 0.8333
Dorea patient (8.71,15.3] 5.771e-03 5.202e-03 5.261e-03 0.7500
Dorea patient (15.3,26.4] 7.822e-03 1.426e-02 2.421e-03 0.7778
Unclassified_Firmicutes control [3.18,6.27] 1.733e-02 1.911e-02 1.140e-02 1.0000
Unclassified_Firmicutes control (6.27,8.71] 5.170e-03 3.893e-03 5.170e-03 1.0000
Unclassified_Firmicutes control (8.71,15.3] 4.399e-03 3.706e-03 2.725e-03 1.0000
Unclassified_Firmicutes control (15.3,26.4] 8.517e-03 9.620e-03 4.051e-03 1.0000
Unclassified_Firmicutes patient [3.18,6.27] 5.802e-04 6.260e-04 4.388e-04 0.7500
Unclassified_Firmicutes patient (6.27,8.71] 5.403e-04 3.098e-04 6.376e-04 0.8333
Unclassified_Firmicutes patient (8.71,15.3] 5.489e-03 5.692e-03 4.351e-03 0.7500
Unclassified_Firmicutes patient (15.3,26.4] 3.149e-03 3.116e-03 1.961e-03 1.0000
Lactobacillus control [3.18,6.27] 0.000e+00 0.000e+00 0.000e+00 0.0000
Lactobacillus control (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Lactobacillus control (8.71,15.3] 4.142e-05 7.075e-05 0.000e+00 0.2857
Lactobacillus control (15.3,26.4] 3.654e-02 8.090e-02 7.077e-05 0.6000
Lactobacillus patient [3.18,6.27] 3.799e-05 7.597e-05 0.000e+00 0.2500
Lactobacillus patient (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Lactobacillus patient (8.71,15.3] 1.325e-03 2.651e-03 0.000e+00 0.2500
Lactobacillus patient (15.3,26.4] 2.868e-04 6.605e-04 0.000e+00 0.2222

(1.2.1.3.6.2.4.2.1.1.1) Figure 329. Abundance. Data grouped by Sample.type,age.quant. bar_stacked plot. Image file: plots/3231c99a1c0.svg.

(1.2.1.3.6.2.4.2.1.1.1) Figure 330. Abundance. Data grouped by Sample.type,age.quant. bar (sample mean) plot. Image file: plots/32379c7703b.svg.

(1.2.1.3.6.2.4.2.1.1.1) Figure 331. Abundance. Data grouped by Sample.type,age.quant. violin plot. Image file: plots/3235e353bb1.svg.

(1.2.1.3.6.2.4.2.1.1.1) Figure 332. Abundance. Data grouped by Sample.type,age.quant. boxplot plot. Image file: plots/32315161323.svg.

(1.2.1.3.6.2.4.2.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.3.6.2.4.2.1.2.1) Figure 333. Abundance. Data grouped by Sample.type,age.quant. bar (sample mean) plot. Image file: plots/3232a8af4ac.svg.

(1.2.1.3.6.2.4.2.1.2.1) Figure 334. Abundance. Data grouped by Sample.type,age.quant. violin plot. Image file: plots/3234730320c.svg.

(1.2.1.3.6.2.4.2.1.2.1) Figure 335. Abundance. Data grouped by Sample.type,age.quant. boxplot plot. Image file: plots/32329b1d7e4.svg.

(1.2.1.3.6.2.4.2.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.2.1.3.6.2.4.2.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.3.6.2.4.2.2.1.1) Figure 336. Abundance. Data grouped by Sample.type,age.quant. bar (sample mean) plot. Image file: plots/32311badaf5.svg.

(1.2.1.3.6.2.4.2.2.1.1) Figure 337. Abundance. Data grouped by Sample.type,age.quant. violin plot. Image file: plots/3234d28f1db.svg.

(1.2.1.3.6.2.4.2.2.1.1) Figure 338. Abundance. Data grouped by Sample.type,age.quant. boxplot plot. Image file: plots/32362b149ad.svg.

(1.2.1.3.6.2.4.2.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.3.6.2.4.2.2.2.1) Figure 339. Abundance. Data grouped by Sample.type,age.quant. bar (sample mean) plot. Image file: plots/32364ad87ac.svg.

(1.2.1.3.6.2.4.2.2.2.1) Figure 340. Abundance. Data grouped by Sample.type,age.quant. violin plot. Image file: plots/323295f9e08.svg.

(1.2.1.3.6.2.4.2.2.2.1) Figure 341. Abundance. Data grouped by Sample.type,age.quant. boxplot plot. Image file: plots/3233eddd5a6.svg.

(1.2.1.3.6.2.4.3) Abundance. profile sorting order: Ranking by 'stabsel' method
(1.2.1.3.6.2.4.4) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.2.1.3.6.2.4.4.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.2.1.3.6.2.4.4.1.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.3.6.2.4.4.1.1.0) Table 93. Data table used for plots. Data grouped by Sample.type,age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.3.6.2.4.4.1.1.0-32310759a76.1.2.1.3.6.2.4.4.1.1.csv

.record.id Sample.type age.quant feature Abundance
SB1 control (8.71,15.3] Bacteroides 6.247e-01
SB10 control (15.3,26.4] Bacteroides 6.327e-02
SB11 patient (8.71,15.3] Bacteroides 4.295e-01
SB12 control [3.18,6.27] Bacteroides 0.000e+00
SB13 control (6.27,8.71] Bacteroides 2.126e-01
SB14 control (8.71,15.3] Bacteroides 7.465e-02
SB15 control (8.71,15.3] Bacteroides 5.242e-01
SB16 patient (15.3,26.4] Bacteroides 8.130e-01
SB17 patient (15.3,26.4] Bacteroides 1.435e-01
SB18 patient (15.3,26.4] Bacteroides 8.611e-01
SB19 control (15.3,26.4] Bacteroides 1.797e-02
SB21 control [3.18,6.27] Bacteroides 1.440e-01
SB22 patient (6.27,8.71] Bacteroides 5.831e-01
SB23 patient (15.3,26.4] Bacteroides 6.404e-01
SB24 control (8.71,15.3] Bacteroides 3.247e-01
SB25 control (8.71,15.3] Bacteroides 4.587e-01
SB26 control (6.27,8.71] Bacteroides 3.742e-01
SB28 patient (6.27,8.71] Bacteroides 1.747e-01
SB29 patient (6.27,8.71] Bacteroides 8.679e-01
SB3 control [3.18,6.27] Bacteroides 2.611e-02
SB30 patient (6.27,8.71] Bacteroides 8.108e-01
SB31 control (8.71,15.3] Bacteroides 6.218e-01
SB32 control (15.3,26.4] Bacteroides 3.301e-01
SB33 control (8.71,15.3] Bacteroides 8.153e-01
SB34 patient (15.3,26.4] Bacteroides 7.735e-01
SB35 patient (8.71,15.3] Bacteroides 9.643e-01
SB36 patient [3.18,6.27] Bacteroides 5.438e-01
SB38 patient (15.3,26.4] Bacteroides 4.095e-01
SB39 patient (8.71,15.3] Bacteroides 5.037e-01
SB4 patient [3.18,6.27] Bacteroides 9.292e-01
SB40 control [3.18,6.27] Bacteroides 4.955e-01
SB41 patient (6.27,8.71] Bacteroides 8.674e-01
SB42 patient [3.18,6.27] Bacteroides 6.375e-01
SB43 patient (15.3,26.4] Bacteroides 2.885e-01
SB44 patient [3.18,6.27] Bacteroides 8.199e-01
SB45 control (15.3,26.4] Bacteroides 2.115e-03
SB5 patient (15.3,26.4] Bacteroides 8.105e-02
SB6 patient (6.27,8.71] Bacteroides 7.723e-01
SB7 control (15.3,26.4] Bacteroides 4.120e-01
SB8 patient (15.3,26.4] Bacteroides 4.490e-01
SB9 patient (8.71,15.3] Bacteroides 3.976e-02
SB1 control (8.71,15.3] Prevotella 2.046e-03
SB10 control (15.3,26.4] Prevotella 4.438e-01
SB11 patient (8.71,15.3] Prevotella 1.652e-02
SB12 control [3.18,6.27] Prevotella 0.000e+00
SB13 control (6.27,8.71] Prevotella 0.000e+00
SB14 control (8.71,15.3] Prevotella 6.747e-01
SB15 control (8.71,15.3] Prevotella 2.758e-04
SB16 patient (15.3,26.4] Prevotella 4.137e-04
SB17 patient (15.3,26.4] Prevotella 6.822e-01
SB18 patient (15.3,26.4] Prevotella 2.480e-04
SB19 control (15.3,26.4] Prevotella 1.978e-01
SB21 control [3.18,6.27] Prevotella 5.399e-04
SB22 patient (6.27,8.71] Prevotella 0.000e+00
SB23 patient (15.3,26.4] Prevotella 0.000e+00
SB24 control (8.71,15.3] Prevotella 2.151e-03
SB25 control (8.71,15.3] Prevotella 2.131e-03
SB26 control (6.27,8.71] Prevotella 0.000e+00
SB28 patient (6.27,8.71] Prevotella 0.000e+00
SB29 patient (6.27,8.71] Prevotella 3.600e-04
SB3 control [3.18,6.27] Prevotella 3.314e-01
SB30 patient (6.27,8.71] Prevotella 1.009e-04
SB31 control (8.71,15.3] Prevotella 2.198e-04
SB32 control (15.3,26.4] Prevotella 7.741e-04
SB33 control (8.71,15.3] Prevotella 5.743e-05
SB34 patient (15.3,26.4] Prevotella 2.598e-04
SB35 patient (8.71,15.3] Prevotella 0.000e+00
SB36 patient [3.18,6.27] Prevotella 1.804e-01
SB38 patient (15.3,26.4] Prevotella 4.073e-01
SB39 patient (8.71,15.3] Prevotella 0.000e+00
SB4 patient [3.18,6.27] Prevotella 0.000e+00
SB40 control [3.18,6.27] Prevotella 0.000e+00
SB41 patient (6.27,8.71] Prevotella 1.328e-04
SB42 patient [3.18,6.27] Prevotella 0.000e+00
SB43 patient (15.3,26.4] Prevotella 4.502e-01
SB44 patient [3.18,6.27] Prevotella 0.000e+00
SB45 control (15.3,26.4] Prevotella 8.603e-01
SB5 patient (15.3,26.4] Prevotella 8.062e-03
SB6 patient (6.27,8.71] Prevotella 7.416e-04
SB7 control (15.3,26.4] Prevotella 1.415e-04
SB8 patient (15.3,26.4] Prevotella 0.000e+00
SB9 patient (8.71,15.3] Prevotella 1.855e-02
SB1 control (8.71,15.3] Unclassified_Lachnospiraceae 2.637e-02
SB10 control (15.3,26.4] Unclassified_Lachnospiraceae 7.553e-02
SB11 patient (8.71,15.3] Unclassified_Lachnospiraceae 1.116e-02
SB12 control [3.18,6.27] Unclassified_Lachnospiraceae 9.506e-02
SB13 control (6.27,8.71] Unclassified_Lachnospiraceae 1.862e-01
SB14 control (8.71,15.3] Unclassified_Lachnospiraceae 7.117e-02
SB15 control (8.71,15.3] Unclassified_Lachnospiraceae 7.501e-02
SB16 patient (15.3,26.4] Unclassified_Lachnospiraceae 2.938e-02
SB17 patient (15.3,26.4] Unclassified_Lachnospiraceae 1.402e-02
SB18 patient (15.3,26.4] Unclassified_Lachnospiraceae 1.097e-02
SB19 control (15.3,26.4] Unclassified_Lachnospiraceae 5.214e-02
SB21 control [3.18,6.27] Unclassified_Lachnospiraceae 1.109e-01
SB22 patient (6.27,8.71] Unclassified_Lachnospiraceae 1.113e-01
SB23 patient (15.3,26.4] Unclassified_Lachnospiraceae 6.495e-02
SB24 control (8.71,15.3] Unclassified_Lachnospiraceae 3.844e-02
SB25 control (8.71,15.3] Unclassified_Lachnospiraceae 2.323e-02
SB26 control (6.27,8.71] Unclassified_Lachnospiraceae 2.256e-02
SB28 patient (6.27,8.71] Unclassified_Lachnospiraceae 3.934e-03
SB29 patient (6.27,8.71] Unclassified_Lachnospiraceae 3.240e-03
SB3 control [3.18,6.27] Unclassified_Lachnospiraceae 5.534e-02
SB30 patient (6.27,8.71] Unclassified_Lachnospiraceae 8.278e-03
SB31 control (8.71,15.3] Unclassified_Lachnospiraceae 6.396e-02
SB32 control (15.3,26.4] Unclassified_Lachnospiraceae 1.078e-01
SB33 control (8.71,15.3] Unclassified_Lachnospiraceae 4.324e-02
SB34 patient (15.3,26.4] Unclassified_Lachnospiraceae 4.529e-02
SB35 patient (8.71,15.3] Unclassified_Lachnospiraceae 1.204e-03
SB36 patient [3.18,6.27] Unclassified_Lachnospiraceae 0.000e+00
SB38 patient (15.3,26.4] Unclassified_Lachnospiraceae 1.135e-02
SB39 patient (8.71,15.3] Unclassified_Lachnospiraceae 2.995e-02
SB4 patient [3.18,6.27] Unclassified_Lachnospiraceae 6.331e-03
SB40 control [3.18,6.27] Unclassified_Lachnospiraceae 6.498e-02
SB41 patient (6.27,8.71] Unclassified_Lachnospiraceae 1.049e-02
SB42 patient [3.18,6.27] Unclassified_Lachnospiraceae 4.444e-02
SB43 patient (15.3,26.4] Unclassified_Lachnospiraceae 1.844e-03
SB44 patient [3.18,6.27] Unclassified_Lachnospiraceae 3.899e-02
SB45 control (15.3,26.4] Unclassified_Lachnospiraceae 1.763e-02
SB5 patient (15.3,26.4] Unclassified_Lachnospiraceae 9.925e-02
SB6 patient (6.27,8.71] Unclassified_Lachnospiraceae 1.112e-02
SB7 control (15.3,26.4] Unclassified_Lachnospiraceae 5.053e-02
SB8 patient (15.3,26.4] Unclassified_Lachnospiraceae 5.532e-02
SB9 patient (8.71,15.3] Unclassified_Lachnospiraceae 6.172e-02
SB1 control (8.71,15.3] Alistipes 5.342e-02
SB10 control (15.3,26.4] Alistipes 2.614e-02
SB11 patient (8.71,15.3] Alistipes 2.482e-01
SB12 control [3.18,6.27] Alistipes 0.000e+00
SB13 control (6.27,8.71] Alistipes 0.000e+00
SB14 control (8.71,15.3] Alistipes 1.418e-02
SB15 control (8.71,15.3] Alistipes 0.000e+00
SB16 patient (15.3,26.4] Alistipes 0.000e+00
SB17 patient (15.3,26.4] Alistipes 3.344e-03
SB18 patient (15.3,26.4] Alistipes 2.480e-04
SB19 control (15.3,26.4] Alistipes 1.039e-02
SB21 control [3.18,6.27] Alistipes 1.152e-02
SB22 patient (6.27,8.71] Alistipes 8.061e-03
SB23 patient (15.3,26.4] Alistipes 6.092e-02
SB24 control (8.71,15.3] Alistipes 3.071e-01
SB25 control (8.71,15.3] Alistipes 1.162e-01
SB26 control (6.27,8.71] Alistipes 1.064e-01
SB28 patient (6.27,8.71] Alistipes 0.000e+00
SB29 patient (6.27,8.71] Alistipes 2.808e-02
SB3 control [3.18,6.27] Alistipes 2.383e-02
SB30 patient (6.27,8.71] Alistipes 4.487e-02
SB31 control (8.71,15.3] Alistipes 5.861e-03
SB32 control (15.3,26.4] Alistipes 3.902e-02
SB33 control (8.71,15.3] Alistipes 0.000e+00
SB34 patient (15.3,26.4] Alistipes 9.784e-03
SB35 patient (8.71,15.3] Alistipes 0.000e+00
SB36 patient [3.18,6.27] Alistipes 2.740e-02
SB38 patient (15.3,26.4] Alistipes 7.861e-02
SB39 patient (8.71,15.3] Alistipes 1.514e-02
SB4 patient [3.18,6.27] Alistipes 0.000e+00
SB40 control [3.18,6.27] Alistipes 2.642e-02
SB41 patient (6.27,8.71] Alistipes 5.613e-02
SB42 patient [3.18,6.27] Alistipes 0.000e+00
SB43 patient (15.3,26.4] Alistipes 1.058e-02
SB44 patient [3.18,6.27] Alistipes 4.393e-03
SB45 control (15.3,26.4] Alistipes 8.814e-05
SB5 patient (15.3,26.4] Alistipes 0.000e+00
SB6 patient (6.27,8.71] Alistipes 3.522e-02
SB7 control (15.3,26.4] Alistipes 6.419e-02
SB8 patient (15.3,26.4] Alistipes 1.164e-01
SB9 patient (8.71,15.3] Alistipes 0.000e+00
SB1 control (8.71,15.3] Faecalibacterium 2.273e-02
SB10 control (15.3,26.4] Faecalibacterium 5.799e-02
SB11 patient (8.71,15.3] Faecalibacterium 4.018e-03
SB12 control [3.18,6.27] Faecalibacterium 0.000e+00
SB13 control (6.27,8.71] Faecalibacterium 2.421e-02
SB14 control (8.71,15.3] Faecalibacterium 3.571e-02
SB15 control (8.71,15.3] Faecalibacterium 1.193e-02
SB16 patient (15.3,26.4] Faecalibacterium 4.137e-04
SB17 patient (15.3,26.4] Faecalibacterium 2.804e-02
SB18 patient (15.3,26.4] Faecalibacterium 1.550e-03
SB19 control (15.3,26.4] Faecalibacterium 1.059e-01
SB21 control [3.18,6.27] Faecalibacterium 1.195e-01
SB22 patient (6.27,8.71] Faecalibacterium 1.267e-02
SB23 patient (15.3,26.4] Faecalibacterium 2.891e-02
SB24 control (8.71,15.3] Faecalibacterium 1.406e-02
SB25 control (8.71,15.3] Faecalibacterium 2.110e-02
SB26 control (6.27,8.71] Faecalibacterium 3.760e-03
SB28 patient (6.27,8.71] Faecalibacterium 0.000e+00
SB29 patient (6.27,8.71] Faecalibacterium 8.999e-03
SB3 control [3.18,6.27] Faecalibacterium 1.018e-01
SB30 patient (6.27,8.71] Faecalibacterium 1.620e-02
SB31 control (8.71,15.3] Faecalibacterium 4.484e-02
SB32 control (15.3,26.4] Faecalibacterium 5.589e-02
SB33 control (8.71,15.3] Faecalibacterium 3.578e-02
SB34 patient (15.3,26.4] Faecalibacterium 1.030e-02
SB35 patient (8.71,15.3] Faecalibacterium 2.047e-02
SB36 patient [3.18,6.27] Faecalibacterium 4.795e-02
SB38 patient (15.3,26.4] Faecalibacterium 4.735e-03
SB39 patient (8.71,15.3] Faecalibacterium 3.221e-02
SB4 patient [3.18,6.27] Faecalibacterium 1.115e-02
SB40 control [3.18,6.27] Faecalibacterium 2.535e-02
SB41 patient (6.27,8.71] Faecalibacterium 8.897e-03
SB42 patient [3.18,6.27] Faecalibacterium 5.553e-02
SB43 patient (15.3,26.4] Faecalibacterium 3.553e-02
SB44 patient [3.18,6.27] Faecalibacterium 2.252e-02
SB45 control (15.3,26.4] Faecalibacterium 6.522e-03

(1.2.1.3.6.2.4.4.1.1.1) Widget 97. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by Sample.type,age.quant. Click to see HTML widget file in full window: ./1.2.1.3.6.2.4.4.1.1.1-3238efce99Dynamic.Pivot.Table.html

(1.2.1.3.6.2.4.4.1.1.1) Widget 98. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by Sample.type,age.quant. Click to see HTML widget file in full window: ./1.2.1.3.6.2.4.4.1.1.1-32329e6ce53Dynamic.Pivot.Table.html

(1.2.1.3.6.2.4.4.1.1.1) Table 94. Summary table. Data grouped by Sample.type,age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.2.1.3.6.2.4.4.1.1.1-32331af1a3b.1.2.1.3.6.2.4.4.1.1.csv

feature Sample.type age.quant mean sd median incidence
Lachnospiracea_incertae_sedis control [3.18,6.27] 4.080e-02 4.068e-02 3.300e-02 0.7500
Lachnospiracea_incertae_sedis control (6.27,8.71] 5.852e-02 6.414e-02 5.852e-02 1.0000
Lachnospiracea_incertae_sedis control (8.71,15.3] 2.262e-02 1.203e-02 1.850e-02 1.0000
Lachnospiracea_incertae_sedis control (15.3,26.4] 3.297e-02 2.281e-02 3.202e-02 1.0000
Lachnospiracea_incertae_sedis patient [3.18,6.27] 9.311e-03 1.193e-02 5.389e-03 1.0000
Lachnospiracea_incertae_sedis patient (6.27,8.71] 6.296e-03 1.131e-02 2.195e-03 0.8333
Lachnospiracea_incertae_sedis patient (8.71,15.3] 7.813e-03 8.026e-03 6.159e-03 0.7500
Lachnospiracea_incertae_sedis patient (15.3,26.4] 1.418e-02 1.273e-02 1.241e-02 1.0000
Unclassified_Lachnospiraceae control [3.18,6.27] 8.156e-02 2.584e-02 8.002e-02 1.0000
Unclassified_Lachnospiraceae control (6.27,8.71] 1.044e-01 1.157e-01 1.044e-01 1.0000
Unclassified_Lachnospiraceae control (8.71,15.3] 4.877e-02 2.126e-02 4.324e-02 1.0000
Unclassified_Lachnospiraceae control (15.3,26.4] 6.072e-02 3.342e-02 5.214e-02 1.0000
Unclassified_Lachnospiraceae patient [3.18,6.27] 2.244e-02 2.252e-02 2.266e-02 0.7500
Unclassified_Lachnospiraceae patient (6.27,8.71] 2.473e-02 4.255e-02 9.384e-03 1.0000
Unclassified_Lachnospiraceae patient (8.71,15.3] 2.601e-02 2.662e-02 2.056e-02 1.0000
Unclassified_Lachnospiraceae patient (15.3,26.4] 3.693e-02 3.205e-02 2.938e-02 1.0000
Bacteroides control [3.18,6.27] 1.664e-01 2.282e-01 8.504e-02 0.7500
Bacteroides control (6.27,8.71] 2.934e-01 1.142e-01 2.934e-01 1.0000
Bacteroides control (8.71,15.3] 4.920e-01 2.392e-01 5.242e-01 1.0000
Bacteroides control (15.3,26.4] 1.651e-01 1.915e-01 6.327e-02 1.0000
Bacteroides patient [3.18,6.27] 7.326e-01 1.741e-01 7.287e-01 1.0000
Bacteroides patient (6.27,8.71] 6.794e-01 2.686e-01 7.916e-01 1.0000
Bacteroides patient (8.71,15.3] 4.843e-01 3.792e-01 4.666e-01 1.0000
Bacteroides patient (15.3,26.4] 4.955e-01 2.917e-01 4.490e-01 1.0000
Gemmiger control [3.18,6.27] 8.726e-03 8.037e-03 7.812e-03 0.7500
Gemmiger control (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Gemmiger control (8.71,15.3] 4.561e-03 4.064e-03 4.049e-03 1.0000
Gemmiger control (15.3,26.4] 8.159e-03 5.849e-03 8.825e-03 1.0000
Gemmiger patient [3.18,6.27] 5.510e-04 9.122e-04 1.507e-04 0.5000
Gemmiger patient (6.27,8.71] 1.918e-04 4.698e-04 0.000e+00 0.1667
Gemmiger patient (8.71,15.3] 3.168e-03 5.843e-03 3.786e-04 0.5000
Gemmiger patient (15.3,26.4] 2.818e-03 2.769e-03 2.152e-03 0.8889
Ruminococcus control [3.18,6.27] 7.306e-02 8.032e-02 5.461e-02 0.7500
Ruminococcus control (6.27,8.71] 1.708e-01 2.154e-01 1.708e-01 1.0000
Ruminococcus control (8.71,15.3] 1.832e-02 1.236e-02 1.987e-02 1.0000
Ruminococcus control (15.3,26.4] 5.302e-02 9.006e-02 1.039e-02 1.0000
Ruminococcus patient [3.18,6.27] 3.007e-03 2.731e-03 2.482e-03 1.0000
Ruminococcus patient (6.27,8.71] 8.696e-03 1.685e-02 2.294e-03 0.8333
Ruminococcus patient (8.71,15.3] 2.804e-03 3.576e-03 1.591e-03 0.7500
Ruminococcus patient (15.3,26.4] 4.845e-03 5.546e-03 2.959e-03 1.0000
Unclassified_Ruminococcaceae control [3.18,6.27] 5.179e-02 4.741e-02 5.002e-02 0.7500
Unclassified_Ruminococcaceae control (6.27,8.71] 1.940e-02 6.720e-04 1.940e-02 1.0000
Unclassified_Ruminococcaceae control (8.71,15.3] 2.411e-02 2.330e-02 9.541e-03 1.0000
Unclassified_Ruminococcaceae control (15.3,26.4] 3.919e-02 3.238e-02 2.240e-02 1.0000
Unclassified_Ruminococcaceae patient [3.18,6.27] 6.699e-03 7.952e-03 3.678e-03 1.0000
Unclassified_Ruminococcaceae patient (6.27,8.71] 8.961e-03 7.990e-03 8.742e-03 1.0000
Unclassified_Ruminococcaceae patient (8.71,15.3] 9.735e-03 9.012e-03 8.319e-03 1.0000
Unclassified_Ruminococcaceae patient (15.3,26.4] 1.841e-02 4.008e-02 3.859e-03 1.0000
Unclassified_Firmicutes control [3.18,6.27] 1.733e-02 1.911e-02 1.140e-02 1.0000
Unclassified_Firmicutes control (6.27,8.71] 5.170e-03 3.893e-03 5.170e-03 1.0000
Unclassified_Firmicutes control (8.71,15.3] 4.399e-03 3.706e-03 2.725e-03 1.0000
Unclassified_Firmicutes control (15.3,26.4] 8.517e-03 9.620e-03 4.051e-03 1.0000
Unclassified_Firmicutes patient [3.18,6.27] 5.802e-04 6.260e-04 4.388e-04 0.7500
Unclassified_Firmicutes patient (6.27,8.71] 5.403e-04 3.098e-04 6.376e-04 0.8333
Unclassified_Firmicutes patient (8.71,15.3] 5.489e-03 5.692e-03 4.351e-03 0.7500
Unclassified_Firmicutes patient (15.3,26.4] 3.149e-03 3.116e-03 1.961e-03 1.0000
Unclassified_Bacteria control [3.18,6.27] 3.150e-02 1.296e-02 3.515e-02 1.0000
Unclassified_Bacteria control (6.27,8.71] 1.413e-02 3.183e-03 1.413e-02 1.0000
Unclassified_Bacteria control (8.71,15.3] 8.804e-03 6.898e-03 4.902e-03 1.0000
Unclassified_Bacteria control (15.3,26.4] 8.650e-03 4.090e-03 6.967e-03 1.0000
Unclassified_Bacteria patient [3.18,6.27] 2.542e-02 4.342e-02 4.886e-03 1.0000
Unclassified_Bacteria patient (6.27,8.71] 6.112e-03 7.995e-03 2.421e-03 1.0000
Unclassified_Bacteria patient (8.71,15.3] 4.959e-03 3.460e-03 5.899e-03 0.7500
Unclassified_Bacteria patient (15.3,26.4] 4.365e-03 4.145e-03 3.658e-03 1.0000
Clostridium_IV control [3.18,6.27] 2.029e-02 1.902e-02 1.826e-02 0.7500
Clostridium_IV control (6.27,8.71] 3.086e-02 1.939e-03 3.086e-02 1.0000
Clostridium_IV control (8.71,15.3] 1.580e-02 3.080e-02 1.999e-03 1.0000
Clostridium_IV control (15.3,26.4] 1.096e-02 8.970e-03 1.192e-02 1.0000
Clostridium_IV patient [3.18,6.27] 3.903e-04 3.147e-04 4.388e-04 0.7500
Clostridium_IV patient (6.27,8.71] 8.575e-03 1.306e-02 3.401e-03 0.8333
Clostridium_IV patient (8.71,15.3] 4.282e-03 5.078e-03 3.571e-03 0.5000
Clostridium_IV patient (15.3,26.4] 5.386e-03 8.526e-03 2.246e-03 1.0000
Roseburia control [3.18,6.27] 9.964e-03 5.332e-03 9.239e-03 1.0000
Roseburia control (6.27,8.71] 1.225e-02 1.504e-02 1.225e-02 1.0000
Roseburia control (8.71,15.3] 8.139e-03 5.343e-03 5.968e-03 1.0000
Roseburia control (15.3,26.4] 9.287e-03 7.550e-03 6.298e-03 1.0000
Roseburia patient [3.18,6.27] 4.349e-03 4.891e-03 3.068e-03 0.7500
Roseburia patient (6.27,8.71] 4.317e-03 6.315e-03 2.265e-03 0.8333
Roseburia patient (8.71,15.3] 6.862e-03 9.403e-03 3.111e-03 1.0000
Roseburia patient (15.3,26.4] 5.603e-03 6.092e-03 3.400e-03 0.8889
Dorea control [3.18,6.27] 5.460e-03 5.500e-03 4.802e-03 0.7500
Dorea control (6.27,8.71] 1.061e-02 7.406e-03 1.061e-02 1.0000
Dorea control (8.71,15.3] 9.462e-03 1.047e-02 4.476e-03 1.0000
Dorea control (15.3,26.4] 8.967e-03 1.083e-02 5.307e-03 1.0000
Dorea patient [3.18,6.27] 9.027e-04 1.176e-03 5.698e-04 0.5000
Dorea patient (6.27,8.71] 2.684e-03 5.471e-03 5.341e-04 0.8333
Dorea patient (8.71,15.3] 5.771e-03 5.202e-03 5.261e-03 0.7500
Dorea patient (15.3,26.4] 7.822e-03 1.426e-02 2.421e-03 0.7778
Oscillibacter control [3.18,6.27] 2.049e-03 2.658e-03 1.129e-03 0.7500
Oscillibacter control (6.27,8.71] 3.641e-03 1.692e-04 3.641e-03 1.0000
Oscillibacter control (8.71,15.3] 5.819e-03 7.485e-03 3.004e-03 0.8571
Oscillibacter control (15.3,26.4] 4.826e-03 4.963e-03 4.180e-03 1.0000
Oscillibacter patient [3.18,6.27] 4.077e-03 4.056e-03 4.174e-03 0.7500
Oscillibacter patient (6.27,8.71] 3.396e-03 4.553e-03 1.838e-03 0.8333
Oscillibacter patient (8.71,15.3] 9.621e-04 1.452e-03 3.618e-04 0.7500
Oscillibacter patient (15.3,26.4] 1.280e-03 1.913e-03 9.919e-04 0.7778
Odoribacter control [3.18,6.27] 8.551e-04 1.575e-03 1.036e-04 0.5000
Odoribacter control (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Odoribacter control (8.71,15.3] 4.321e-03 7.414e-03 9.093e-04 0.5714
Odoribacter control (15.3,26.4] 5.978e-03 8.401e-03 8.807e-04 0.8000
Odoribacter patient [3.18,6.27] 0.000e+00 0.000e+00 0.000e+00 0.0000
Odoribacter patient (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Odoribacter patient (8.71,15.3] 4.675e-03 8.512e-03 6.441e-04 0.5000
Odoribacter patient (15.3,26.4] 2.846e-03 5.579e-03 0.000e+00 0.4444
Bifidobacterium control [3.18,6.27] 5.198e-02 9.218e-02 8.726e-03 1.0000
Bifidobacterium control (6.27,8.71] 6.207e-03 1.181e-03 6.207e-03 1.0000
Bifidobacterium control (8.71,15.3] 2.163e-03 2.035e-03 1.586e-03 1.0000
Bifidobacterium control (15.3,26.4] 7.125e-03 1.523e-02 0.000e+00 0.4000
Bifidobacterium patient [3.18,6.27] 1.029e-03 1.508e-03 4.253e-04 0.7500
Bifidobacterium patient (6.27,8.71] 4.403e-04 6.691e-04 2.524e-05 0.5000
Bifidobacterium patient (8.71,15.3] 7.789e-03 1.000e-02 5.112e-03 0.5000
Bifidobacterium patient (15.3,26.4] 3.633e-04 3.749e-04 3.363e-04 0.7778
Barnesiella control [3.18,6.27] 2.073e-04 4.145e-04 0.000e+00 0.2500
Barnesiella control (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Barnesiella control (8.71,15.3] 6.212e-03 7.558e-03 1.137e-03 0.7143
Barnesiella control (15.3,26.4] 7.816e-04 1.044e-03 1.763e-04 0.6000
Barnesiella patient [3.18,6.27] 9.513e-05 1.903e-04 0.000e+00 0.2500
Barnesiella patient (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Barnesiella patient (8.71,15.3] 3.013e-03 6.027e-03 0.000e+00 0.2500
Barnesiella patient (15.3,26.4] 1.470e-03 4.112e-03 0.000e+00 0.4444
Faecalibacterium control [3.18,6.27] 6.165e-02 5.794e-02 6.355e-02 0.7500
Faecalibacterium control (6.27,8.71] 1.398e-02 1.446e-02 1.398e-02 1.0000
Faecalibacterium control (8.71,15.3] 2.659e-02 1.237e-02 2.273e-02 1.0000
Faecalibacterium control (15.3,26.4] 5.276e-02 3.615e-02 5.589e-02 1.0000
Faecalibacterium patient [3.18,6.27] 3.429e-02 2.091e-02 3.523e-02 1.0000
Faecalibacterium patient (6.27,8.71] 1.731e-02 2.023e-02 1.083e-02 0.8333
Faecalibacterium patient (8.71,15.3] 3.093e-02 2.669e-02 2.634e-02 1.0000
Faecalibacterium patient (15.3,26.4] 2.920e-02 4.048e-02 2.186e-02 1.0000
Prevotella control [3.18,6.27] 8.298e-02 1.656e-01 2.699e-04 0.5000
Prevotella control (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Prevotella control (8.71,15.3] 9.737e-02 2.546e-01 2.046e-03 1.0000
Prevotella control (15.3,26.4] 3.006e-01 3.621e-01 1.978e-01 1.0000
Prevotella patient [3.18,6.27] 4.509e-02 9.018e-02 0.000e+00 0.2500
Prevotella patient (6.27,8.71] 2.225e-04 2.864e-04 1.169e-04 0.6667
Prevotella patient (8.71,15.3] 8.768e-03 1.016e-02 8.259e-03 0.5000
Prevotella patient (15.3,26.4] 1.721e-01 2.664e-01 4.137e-04 0.7778
Clostridium_XVIII control [3.18,6.27] 2.631e-03 2.702e-03 2.228e-03 0.7500
Clostridium_XVIII control (6.27,8.71] 2.263e-02 3.086e-02 2.263e-02 1.0000
Clostridium_XVIII control (8.71,15.3] 1.981e-03 1.893e-03 1.206e-03 1.0000
Clostridium_XVIII control (15.3,26.4] 1.995e-03 3.272e-03 3.406e-04 1.0000
Clostridium_XVIII patient [3.18,6.27] 1.937e-03 2.250e-03 1.785e-03 0.5000
Clostridium_XVIII patient (6.27,8.71] 2.815e-03 3.092e-03 1.714e-03 1.0000
Clostridium_XVIII patient (8.71,15.3] 3.643e-03 5.146e-03 1.650e-03 0.7500
Clostridium_XVIII patient (15.3,26.4] 4.794e-03 5.230e-03 1.801e-03 1.0000
Blautia control [3.18,6.27] 7.775e-02 8.403e-02 5.196e-02 1.0000
Blautia control (6.27,8.71] 1.640e-02 1.788e-02 1.640e-02 1.0000
Blautia control (8.71,15.3] 1.226e-02 6.669e-03 9.245e-03 1.0000
Blautia control (15.3,26.4] 1.825e-02 8.970e-03 2.245e-02 1.0000
Blautia patient [3.18,6.27] 6.120e-03 5.998e-03 4.531e-03 1.0000
Blautia patient (6.27,8.71] 9.902e-03 1.677e-02 2.498e-03 0.8333
Blautia patient (8.71,15.3] 1.341e-02 2.265e-02 2.950e-03 1.0000
Blautia patient (15.3,26.4] 1.629e-02 1.779e-02 7.717e-03 1.0000
Megamonas control [3.18,6.27] 0.000e+00 0.000e+00 0.000e+00 0.0000
Megamonas control (6.27,8.71] 0.000e+00 0.000e+00 0.000e+00 0.0000
Megamonas control (8.71,15.3] 2.082e-02 5.034e-02 0.000e+00 0.2857
Megamonas control (15.3,26.4] 2.618e-02 5.853e-02 0.000e+00 0.2000
Megamonas patient [3.18,6.27] 0.000e+00 0.000e+00 0.000e+00 0.0000
Megamonas patient (6.27,8.71] 8.317e-03 2.037e-02 0.000e+00 0.1667
Megamonas patient (8.71,15.3] 0.000e+00 0.000e+00 0.000e+00 0.0000
Megamonas patient (15.3,26.4] 1.210e-05 3.631e-05 0.000e+00 0.1111
Alistipes control [3.18,6.27] 1.544e-02 1.218e-02 1.768e-02 0.7500
Alistipes control (6.27,8.71] 5.318e-02 7.521e-02 5.318e-02 0.5000
Alistipes control (8.71,15.3] 7.096e-02 1.123e-01 1.418e-02 0.7143
Alistipes control (15.3,26.4] 2.796e-02 2.512e-02 2.614e-02 1.0000
Alistipes patient [3.18,6.27] 7.948e-03 1.313e-02 2.197e-03 0.5000
Alistipes patient (6.27,8.71] 2.873e-02 2.148e-02 3.165e-02 0.8333
Alistipes patient (8.71,15.3] 6.584e-02 1.218e-01 7.568e-03 0.5000
Alistipes patient (15.3,26.4] 3.109e-02 4.323e-02 9.784e-03 0.7778
Unclassified_Clostridiales control [3.18,6.27] 2.254e-02 2.069e-02 2.438e-02 0.7500
Unclassified_Clostridiales control (6.27,8.71] 5.386e-02 5.641e-02 5.386e-02 1.0000
Unclassified_Clostridiales control (8.71,15.3] 1.106e-02 5.696e-03 1.137e-02 1.0000
Unclassified_Clostridiales control (15.3,26.4] 1.372e-02 5.152e-03 1.677e-02 1.0000
Unclassified_Clostridiales patient [3.18,6.27] 1.822e-02 2.650e-02 6.996e-03 1.0000
Unclassified_Clostridiales patient (6.27,8.71] 8.724e-03 1.271e-02 4.363e-03 1.0000
Unclassified_Clostridiales patient (8.71,15.3] 1.004e-02 9.992e-03 7.561e-03 1.0000
Unclassified_Clostridiales patient (15.3,26.4] 1.021e-02 1.132e-02 7.447e-03 1.0000
Unclassified_Bacteroidales control [3.18,6.27] 8.947e-04 1.185e-03 5.399e-04 0.5000
Unclassified_Bacteroidales control (6.27,8.71] 6.715e-04 9.496e-04 6.715e-04 0.5000
Unclassified_Bacteroidales control (8.71,15.3] 3.421e-03 6.095e-03 1.392e-03 1.0000
Unclassified_Bacteroidales control (15.3,26.4] 2.250e-03 1.794e-03 3.321e-03 1.0000
Unclassified_Bacteroidales patient [3.18,6.27] 1.712e-02 3.148e-02 2.057e-03 1.0000
Unclassified_Bacteroidales patient (6.27,8.71] 2.310e-03 2.240e-03 1.282e-03 1.0000
Unclassified_Bacteroidales patient (8.71,15.3] 2.815e-03 2.363e-03 2.396e-03 1.0000
Unclassified_Bacteroidales patient (15.3,26.4] 5.850e-03 8.168e-03 2.186e-03 1.0000
Parabacteroides control [3.18,6.27] 5.456e-03 6.324e-03 4.163e-03 0.7500
Parabacteroides control (6.27,8.71] 1.441e-02 1.229e-02 1.441e-02 1.0000
Parabacteroides control (8.71,15.3] 1.106e-02 8.651e-03 8.687e-03 1.0000
Parabacteroides control (15.3,26.4] 6.214e-03 6.063e-03 2.114e-03 1.0000
Parabacteroides patient [3.18,6.27] 1.256e-02 2.511e-02 0.000e+00 0.2500
Parabacteroides patient (6.27,8.71] 9.182e-02 2.047e-01 1.120e-02 0.8333
Parabacteroides patient (8.71,15.3] 1.677e-02 1.717e-02 1.650e-02 1.0000
Parabacteroides patient (15.3,26.4] 2.120e-02 2.906e-02 1.682e-03 0.7778
Clostridium_XI control [3.18,6.27] 1.041e-02 8.851e-03 1.047e-02 0.7500
Clostridium_XI control (6.27,8.71] 8.848e-03 4.916e-03 8.848e-03 1.0000
Clostridium_XI control (8.71,15.3] 6.620e-03 5.359e-03 6.454e-03 1.0000
Clostridium_XI control (15.3,26.4] 1.255e-02 1.658e-02 7.277e-03 1.0000
Clostridium_XI patient [3.18,6.27] 2.872e-03 2.885e-03 2.435e-03 1.0000
Clostridium_XI patient (6.27,8.71] 9.048e-03 1.740e-02 2.111e-03 0.8333
Clostridium_XI patient (8.71,15.3] 2.091e-02 2.009e-02 2.128e-02 0.7500
Clostridium_XI patient (15.3,26.4] 2.788e-02 7.152e-02 1.655e-03 0.7778

(1.2.1.3.6.2.4.4.1.1.1) Figure 342. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. bar_stacked plot. Image file: plots/32339e8d51f.svg.

(1.2.1.3.6.2.4.4.1.1.1) Figure 343. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/3231eec5de.svg.

(1.2.1.3.6.2.4.4.1.1.1) Figure 344. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/32340d879ef.svg.

(1.2.1.3.6.2.4.4.1.1.1) Figure 345. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/32346710fca.svg.

(1.2.1.3.6.2.4.4.1.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.3.6.2.4.4.1.2.1) Figure 346. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/3235aaaf040.svg.

(1.2.1.3.6.2.4.4.1.2.1) Figure 347. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3231a16a762.svg.

(1.2.1.3.6.2.4.4.1.2.1) Figure 348. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/323774ff85b.svg.

(1.2.1.3.6.2.4.4.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.2.1.3.6.2.4.4.2.1) Abundance. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.2.1.3.6.2.4.4.2.1.1) Figure 349. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/3235a8956da.svg.

(1.2.1.3.6.2.4.4.2.1.1) Figure 350. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3233323babe.svg.

(1.2.1.3.6.2.4.4.2.1.1) Figure 351. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/323559e981e.svg.

(1.2.1.3.6.2.4.4.2.2) Abundance. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.2.1.3.6.2.4.4.2.2.1) Figure 352. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. bar (sample mean) plot. Image file: plots/3232c7a2118.svg.

(1.2.1.3.6.2.4.4.2.2.1) Figure 353. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. violin plot. Image file: plots/3235285a8d4.svg.

(1.2.1.3.6.2.4.4.2.2.1) Figure 354. Abundance. Data grouped by Sample.type,age.quant. Sorting order of features is Ranking by 'stabsel' method. boxplot plot. Image file: plots/32345517e14.svg.

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